Installation

Download

The latest version of the source code is avaible as a tarball and be download here [1]

Earlier versions from here: http://popgen.dk/software/download/angsd/

You might also be interested in a version where we allow for deviations from HWE such as inbreeding. This can be found here [2]

Install

Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.

Unix

The software can be compiled using make. zlib needs to be installed on your system.

wget http://popgen.dk/software/download/angsd/angsd0.557.tar.gz
tar xfz angsd0.557.tar.gz
cd angsd0.557
make
cd ..

Or for users who prefer the last super stable release.

wget http://popgen.dk/software/download/angsd/angsd0.538.tar.gz
tar xfz angsd0.538.tar.gz
cd angsd0.538
make
cd ..

Or for users who prefer the inbreeding version.

wget http://popgen.dk/software/download/angsd/angsd0.543i.tar.gz
tar xfz angsd0.543i.tar.gz
cd angsd0.543i
make
cd ..