|
|
| (17 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| ==New stuff==
| | If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk |
| * Do downsampling
| | =Limitation= |
| * make plink tped output
| |
| * make calibration matrix
| |
| * make snpfilters
| |
| | |
| ==Bugs==
| |
| * if -sim1 and -doGlf then we shouldnt require -GL
| |
| * fix queing of finished threads. MAYBE_FIXED
| |
| | |
| The above will not have an effect on the results. For large number of samples, the -nQueueSize can be used. If memory is a problem.
| |
| | |
| ==Limitation==
| |
| * RG tags are not implemented, we doubt we will ever support this. | | * RG tags are not implemented, we doubt we will ever support this. |
| * We have observed problems for rna data. This will be fixed at some point but is not a priority.
| |
|
| |
| ==small changes that would be nice==
| |
| * check numSites==0 in all generals: derived classes.
| |
|
| |
| * check if subdirs exists in outputfiles. Otherwise subtle crash.
| |
|
| |
| * Only print the FIXED
| |
| ###################
| |
| If you have selected more than one MAF estimator we will choose in following order
| |
| 1. knownminor bfgs
| |
| 2. knownminor EM
| |
| 3. unknownminor bfgs
| |
| 4. unknownminor EM
| |
| 5. Posterior maf
| |
| ###################
| |
|
| |
| If use has selected multple mafs estimators.
| |
|
| |
| * write about single bam -i on wiki
| |
| * should rna be implemented
| |
| * make faster the filter output (ok yoda) FIXED >0.500
| |
| * make program wait for finished threads when changing chromosomes FIXED >0.500
| |
| * modify the chromo to the index instead of the chr* FIXED >0.500
| |
Latest revision as of 16:05, 26 February 2015
If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk
Limitation
- RG tags are not implemented, we doubt we will ever support this.