ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Bugs: Difference between revisions

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1. check numSites==0 in all generals: derived classes.
If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk
 
=Limitation=
2. check if subdirs exists in outputfiles. Otherwise subtle crash.
* RG tags are not implemented, we doubt we will ever support this.
 
3. Only print the
###################
If you have selected more than one MAF estimator we will choose in following order
    1. knownminor bfgs
    2. knownminor EM
    3. unknownminor bfgs
    4. unknownminor EM
    5. Posterior maf
###################
 
4. write about single bam -i on wiki
 
If use has selected multple mafs estimators.
 
Best
 
Thorfinn

Latest revision as of 16:05, 26 February 2015

If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk

Limitation

  • RG tags are not implemented, we doubt we will ever support this.