ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Bugs: Difference between revisions

From angsd
Jump to navigation Jump to search
No edit summary
No edit summary
 
(23 intermediate revisions by 2 users not shown)
Line 1: Line 1:
* fix the maxsize of a chr now its 270e6 FIXED
If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk
* fix queing of finished threads. MAYBE_FIXED
=Limitation=
==Limitation==
* RG tags are not implemented, we doubt we will ever support this.
* RG tags are not implemented, we doubt we will ever support this.
* We have observed problems for rna data. This will be fixed at some point but is not a priority.
==small changes that would be nice==
* check numSites==0 in all generals: derived classes.
* check if subdirs exists in outputfiles. Otherwise subtle crash.
* Only print the FIXED
###################
If you have selected more than one MAF estimator we will choose in following order
    1. knownminor bfgs
    2. knownminor EM
    3. unknownminor bfgs
    4. unknownminor EM
    5. Posterior maf
###################
If use has selected multple mafs estimators.
* write about single bam -i on wiki
* should rna be implemented
* make faster the filter output

Latest revision as of 16:05, 26 February 2015

If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk

Limitation

  • RG tags are not implemented, we doubt we will ever support this.
Retrieved from "https://www.popgen.dk/angsd/index.php?title=Bugs&oldid=2379"