Latest revision as of 16:05, 26 February 2015

If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk

Limitation

@@ Line 1: / Line 1: @@
-. check numSites==0 in all generals: derived classes.
+If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk
+=Limitation=
-. check if subdirs exists in outputfiles. Otherwise subtle crash.
+* RG tags are not implemented, we doubt we will ever support this.
-. Only print the
-###################
- If you have selected more than one MAF estimator we will choose in following order
-. knownminor bfgs
-. knownminor EM
-. unknownminor bfgs
-. unknownminor EM
-. Posterior maf
-###################
-If use has selected multple mafs estimators.
-. write about single bam -i on wiki
-. fix the maxsize of a chr now its 270e6
-Best
-.
-when you do doPost without doMaf gives SEGfault
-.
-use std::isnan std::isinf instead of isnan/isinf such that things work for macos.
-when tou do doGeno 2 all the non variable genotypes appear as 2
-.
-For dumping beaglestyle output you need to estimate major/minor: -doMajorMinor
-./angsd -bam /home/tspr/filelist -GL 1 -r chr8:12500000 -out results -doGlf 4
-.
-nice screen informaqtion doesan't work for
-/home/software/angsd/angsd0.4471/angsd -doGlf
-.
-Huge problem -doSNP only works if -doMAf is included.
-Thorfinn