View source for Introduction

Assuming you have a list of bamfiles in in file: 'list.txt' and you want the genotype likelihoods for position 12500000 on chromosome 8.

<pre>
./angsd -bam list.txt -GL 1 -r chr8:12500000 -out results
</pre>
This is using the SAMtools model for calculating genotype likelihoods see [[Genotype likelihoods]] for other models.