This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods. It is a fancy multithreaded c/c++ program.

Latest version is 32 from June 25 2013. It can be found [1]. Older versions can be found here: [2]

Installation

wget popgen.dk/software/NGSadmix/ngsadmix32.cpp 
g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix

Run example

Assuming we have an input file called input.gz and we assume 3 ancestral populations (-K 3), and that we want to use 4 computing cores (-P 4). The prefix of the output files is myoutfiles (-o)

./NGSadmix -likes input.gz -K 3 -P 4 -tol 0.00000001 -tolLike50 0.01 -o myoutfiles -minMaf 0.05

Input Files

Input files are contains genotype likelihoods in beagle input file format [3]. We recommend ANGSD for easy transformation of Next-generation sequencing data to beagle format.

Options

./NGSadmix
Arguments:
	-likes Beagle likelihood filename
	-K Number of ancestral populations
Optional:
	-fname Ancestral population frequencies
	-qname Admixture proportions
	-o Prefix for output files
	-printInfo print ID and mean maf for the SNPs that were analysed
Setup:
	-seed Seed for initial guess in EM
	-P Number of threads
	-method If 0 no acceleration of EM algorithm
	-misTol Tolerance for considering site as missing
Stop chriteria:
	-tolLike50 Loglikelihood difference in 50 iterations
	-tol Tolerance for convergence
	-dymBound Use dymamic boundaries (1: yes (default) 0: no)
	-maxiter Maximum number of EM iterations
Filtering
	-minMaf Minimum minor allele frequency
	-minLrt Minimum likelihood ratio value for maf>0
	-minInd Minumum number of informative individuals

Output Files

Program outputs 3 files.

PREFIX.log
PREFIX.fopt.gz
PREFIX.qopt

The log file contains log information of the run. Commandline used for running the program, what the likelihood is every 50 iterations, and finally how long it took to do the run.

The fopt.gz file is an compressed file, which contains an estimate of the frequency for each site for all populations.

The qopt file contains the admixture proportions for all individuals.

Examples of the output files are found below.

Log file

Expand

Contents of the file log file

	-> Dumping file: tskSim/tsk6GL.beagle.s1.log
	-> Dumping file: tskSim/tsk6GL.beagle.s1.filter
Input: lname=tskSim/tsk6GL.beagle nPop=3, fname=(null) qname=(null) outfiles=tskSim/tsk6GL.beagle.s1
Setup: seed=1 nThreads=10 method=1
Convergence: maxIter=2000 tol=0.000000 tolLike50=0.010000 dymBound=0
Filters: misTol=0.050000 minMaf=0.000000 minLrt=0.000000 minInd=0
Input file has dim: nsites=100000 nind=75
Input file has dim (AFTER filtering): nsites=100000 nind=75
iter[start] like is=9299805.984931
iter[50] like is=-6531138.892608 thres=0.002800
iter[100] like is=-6528710.773349 thres=0.001289
iter[150] like is=-6528405.896951 thres=0.001211
iter[200] like is=-6528306.803820 thres=0.000420
iter[250] like is=-6528277.160993 thres=0.000546
iter[300] like is=-6528271.925055 thres=0.000033
iter[350] like is=-6528271.177692 thres=0.000008
iter[400] like is=-6528270.876315 thres=0.000005
iter[450] like is=-6528270.772894 thres=0.000140
iter[500] like is=-6528270.747721 thres=0.000002
iter[550] like is=-6528270.740654 thres=0.000002
Convergence achived because log likelihooditer difference for 50 iteraction is less than 0.010000
best like=-6528270.740654 after 550 iterations
	-> Dumping file: tskSim/tsk6GL.beagle.s1.qopt
	-> Dumping file: tskSim/tsk6GL.beagle.s1.fopt.gz
	[ALL done] cpu-time used =  671.82 sec
	[ALL done] walltime used =  114.00 sec

fopt file

Expand

Contents of the fopt file

...
0.75331646167520038837 0.51190946588401886608 0.50134051056701267601 
0.99999999900000002828 0.80165850924934911603 0.97470665326916294813 
0.99999999900000002828 0.89560828888972687789 0.88062641752218895341 
0.99999999900000002828 0.99999999900000002828 0.86109994249930577048 
0.70560445653074521655 0.78994686954000448154 0.93076614062025020413 
0.99999999900000002828 0.88878537780630872955 0.92662857068149151463 
0.05322676762098016434 0.22871739860812340117 0.17394852600322696645 
0.00000000100000000000 0.27428885137150410545 0.19029599645013275944 
0.57086006389212373691 0.42232596591112880891 0.74080063581586474974 
0.77359733910003525281 0.47380864146016693494 0.72073560889718923939 
0.49946404159405927148 0.21684946347150244050 0.15201985942558055021 
0.41802171086717271331 0.55490556205954566504 0.85691127728452165524 
0.77095213528720529794 0.60074618451005279418 0.70219544996184157792 
0.26517850405564091787 0.48500265408436060710 0.85432254709914456914 
0.80055081986260245852 0.74423201242010783574 0.87110476762969968334 
0.30563054476851375663 0.05233529475348827620 0.25911912824038613179 
0.51084997710733415222 0.62263692178557350498 0.50738250264097506381 
0.64790272562679740442 0.91230541484222271720 0.73015721390331478347 
0.07124629651164265942 0.37896482494356753534 0.29218012479334326548 
0.00000000100000000000 0.26969100790961914038 0.28395781874856029781 
0.97074775756045073027 0.79093498372643300520 0.64006920058897498471 
0.64661948716978157048 0.84130009558421925409 0.76730057769159087933 
0.86990900887920663553 0.79410745692063922085 0.69416721874359499367 
0.34956069940263900797 0.27773038429396151860 0.25923476721423144298 
0.77739744690560164120 0.51272232330145017798 0.53888718200036844763 
0.35431569298041332150 0.20022780744715171219 0.43176580786072032980 
0.91858160919413811563 0.99999999900000002828 0.93584179237779097082 
0.90339823126358831384 0.94729687041528465308 0.84358671720630329371 
0.87068129661127857677 0.65267891763324525911 0.59315740612546075106 
0.24102496839012735319 0.42777100607917967201 0.39594098602469629533 
0.99999999900000002828 0.99999999900000002828 0.78549330115836857313 
0.15386277372522660922 0.18035502891341426146 0.26583557049163752950 
0.22456748943597096280 0.25110807159057474403 0.17244618960511531869 
0.74816053649164548922 0.54769319158907958656 0.44532166240679449398 
0.76350303696805599252 0.86547244122202959815 0.94111974586621383043 
0.40940400475566068872 0.67767095908245833513 0.40793761498610620064 
0.85389765162910868934 0.78901563183853873351 0.93614065916219291186 
0.54108661985898742763 0.61895909938546000983 0.88522763262549941654 
0.99051495581855464323 0.78855843624128341141 0.77646441702623147929 
0.51133721761171413434 0.74521610846562824637 0.32689774480116673416 
0.66618479413060949224 0.67891474309775079465 0.80762116232856140385 
0.81793598261160704865 0.77752326447671193943 0.95349025244041396565 
0.82120324647844433752 0.99999999900000002828 0.89800731971059466474 
...

There is currently no way to know the position of the lines of the fopt file if some sites have been flltered from the analysis (-minMaf, minInd, minLRT etc)

qopt file

Expand

Contents of the qopt file # cat tsk48GL.beagle.gz.s1.qopt

0.00254460532103031574 0.00108987228478324210 0.99636552239418640919 
0.00000015905647541105 0.00000000100000000000 0.99999983994352459327 
0.00034770382567266174 0.02639209238328452459 0.97326020379104283275 
0.00000000100000000000 0.00000000100000000000 0.99999999800000005656 
0.00000467398081877176 0.00000000100000000000 0.99999532501918120264 
0.00000000907496942853 0.00585150933779484805 0.99414848158723567728 
0.00515826525767644137 0.01138897436535154552 0.98345276037697204607 
0.03914841746468285949 0.00000000100000000000 0.96085158153531713410 
0.00000000100000000000 0.00629199375758324100 0.99370800524241675866 
0.00771173022930659625 0.00000154720357311662 0.99228672256712036059 
0.00000000100000000000 0.00075135345721917719 0.99924864554278081119 
0.00000000100000000000 0.00000000100000000000 0.99999999799999994554 
0.00000005468413042120 0.00087279924180633879 0.99912714607406327705 
0.00000000100000000000 0.00000000100000000000 0.99999999800000005656 
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0.31745792352948248860 0.33722730677636020280 0.34531476969415725309 
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0.34915111840878915173 0.33072079898488659921 0.32012808260632419355 
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0.33067206673512555826 0.34601992411426535368 0.32330800915060908807 
0.31337643746173032833 0.33835721859074846529 0.34826634394752131740 
0.32762993090356395953 0.34856645453438306337 0.32380361456205303261 
0.33558678075595765877 0.34449062515269568419 0.31992259409134682357 
0.33433652456352996873 0.32868556951924504661 0.33697790591722515119 
0.32115036446030281736 0.35050069566489522321 0.32834893987480190392 
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0.40117357253398744366 0.30569836130272198815 0.29312806616329067921 
0.40013703551439627759 0.28691859513594913933 0.31294436934965452757 
0.39131222513930874474 0.30759794867682349606 0.30108982618386764818 
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0.37635520411942069430 0.29805329179310008358 0.32559150408747933314 
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0.68819873910998985433 0.16242980538224471854 0.14937145550776548264 
0.68619763716276405141 0.14370194479775053042 0.17010041803948539041 
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0.70684340251150390433 0.16654037983665334610 0.12661621765184280508 
0.70657158115262697073 0.14984891346689468983 0.14357950538047842270 
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0.80425538032447896342 0.10720945367236509038 0.08853516600315590457 
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0.87135519951168793895 0.04885203404408157424 0.07979276644423052844 
0.90273220877706750187 0.05642671780738096193 0.04084107341555152232 
0.90299890240805003039 0.05982401615206547896 0.03717708143988454617 
0.88622329583732417646 0.03227381365259313073 0.08150289051008267893 
0.89149278212958615875 0.03556871666107842139 0.07293850120933542680 
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0.89581315874618450135 0.06675457610008654619 0.03743226515372900798 
0.86941364504212315101 0.03330392614486758773 0.09728242881300920575 
0.88098981477392690476 0.04673780362475228600 0.07227238160132080924

Plot results

Use R

admix<-t(as.matrix(read.table("tsk48GL.beagle.gz.s1.qopt")))
barplot(admix,col=1:3,space=0,border=NA,xlab="Individuals",ylab="admixture")

citation

log

v32 june 25-2013; modified code such that it now compiles on OSX
v31 june 24-2013; First public version.

Key	Value
HOST	popgen.dk
CONNECTION	keep-alive
PRAGMA	no-cache
CACHE-CONTROL	no-cache
UPGRADE-INSECURE-REQUESTS	1
USER-AGENT	Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
ACCEPT	text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,/;q=0.8,application/signed-exchange;v=b3;q=0.7
ACCEPT-ENCODING	gzip, deflate

Key	Value
direction	prev
oldid	129
title	NgsAdmix

#	SQL	Time	Call
1	localhost: SET group_concat_max_len = 262144, `sql_mode` = ''	0.0000ms	Wikimedia\Rdbms\DatabaseMysqlBase::open
2	localhost: SELECT @@GLOBAL.read_only AS Value	0.0000ms	Wikimedia\Rdbms\DatabaseMysqlBase::serverIsReadOnly
3	localhost: BEGIN	0.0000ms	Wikimedia\Rdbms\Database::beginIfImplied (MediaWiki\Revision\RevisionStore::fetchRevisionRowFromConds)
4	localhost: SELECT rev_id,rev_page,rev_timestamp,rev_minor_edit,rev_deleted,rev_len,rev_parent_id,rev_sha1,comment_rev_comment.comment_text AS `rev_comment_text`,comment_rev_comment.comment_data AS `rev_comment_data`,comment_rev_comment.comment_id AS `rev_comment_cid`,actor_rev_user.actor_user AS `rev_user`,actor_rev_user.actor_name AS `rev_user_text`,rev_actor,page_namespace,page_title,page_id,page_latest,page_is_redirect,page_len,user_name FROM `my_software_wiki_prefixrevision` JOIN `my_software_wiki_prefixrevision_comment_temp` `temp_rev_comment` ON ((temp_rev_comment.revcomment_rev = rev_id)) JOIN `my_software_wiki_prefixcomment` `comment_rev_comment` ON ((comment_rev_comment.comment_id = temp_rev_comment.revcomment_comment_id)) JOIN `my_software_wiki_prefixactor` `actor_rev_user` ON ((actor_rev_user.actor_id = rev_actor)) JOIN `my_software_wiki_prefixpage` ON ((page_id = rev_page)) LEFT JOIN `my_software_wiki_prefixuser` ON ((actor_rev_user.actor_user != 0) AND (user_id = actor_rev_user.actor_user)) WHERE rev_id = 129 LIMIT 1	0.0000ms	MediaWiki\Revision\RevisionStore::fetchRevisionRowFromConds
5	localhost: SELECT page_id,page_namespace,page_title,page_is_redirect,page_is_new,page_random,page_touched,page_links_updated,page_latest,page_len,page_content_model FROM `my_software_wiki_prefixpage` WHERE page_namespace = 0 AND page_title = 'NgsAdmix' LIMIT 1	0.0000ms	WikiPage::pageData
6	localhost: SELECT rev_id,rev_page,rev_timestamp,rev_minor_edit,rev_deleted,rev_len,rev_parent_id,rev_sha1,comment_rev_comment.comment_text AS `rev_comment_text`,comment_rev_comment.comment_data AS `rev_comment_data`,comment_rev_comment.comment_id AS `rev_comment_cid`,actor_rev_user.actor_user AS `rev_user`,actor_rev_user.actor_name AS `rev_user_text`,rev_actor,page_namespace,page_title,page_id,page_latest,page_is_redirect,page_len,user_name FROM `my_software_wiki_prefixrevision` JOIN `my_software_wiki_prefixrevision_comment_temp` `temp_rev_comment` ON ((temp_rev_comment.revcomment_rev = rev_id)) JOIN `my_software_wiki_prefixcomment` `comment_rev_comment` ON ((comment_rev_comment.comment_id = temp_rev_comment.revcomment_comment_id)) JOIN `my_software_wiki_prefixactor` `actor_rev_user` ON ((actor_rev_user.actor_id = rev_actor)) JOIN `my_software_wiki_prefixpage` ON ((page_id = rev_page)) LEFT JOIN `my_software_wiki_prefixuser` ON ((actor_rev_user.actor_user != 0) AND (user_id = actor_rev_user.actor_user)) WHERE rev_id = 1229 LIMIT 1	0.0000ms	MediaWiki\Revision\RevisionStore::fetchRevisionRowFromConds
7	localhost: SELECT slot_revision_id,slot_content_id,slot_origin,slot_role_id,content_size,content_sha1,content_address,content_model FROM `my_software_wiki_prefixslots` JOIN `my_software_wiki_prefixcontent` ON ((slot_content_id = content_id)) WHERE slot_revision_id = 1229	0.0000ms	MediaWiki\Revision\RevisionStore::loadSlotRecordsFromDb
8	localhost: SELECT role_id AS `id`,role_name AS `name` FROM `my_software_wiki_prefixslot_roles` ORDER BY id	0.0000ms	MediaWiki\Storage\NameTableStore::loadTable
9	localhost: SELECT model_id AS `id`,model_name AS `name` FROM `my_software_wiki_prefixcontent_models` ORDER BY id	0.0000ms	MediaWiki\Storage\NameTableStore::loadTable
10	localhost: SELECT rev_id,rev_page,rev_timestamp,rev_minor_edit,rev_deleted,rev_len,rev_parent_id,rev_sha1,comment_rev_comment.comment_text AS `rev_comment_text`,comment_rev_comment.comment_data AS `rev_comment_data`,comment_rev_comment.comment_id AS `rev_comment_cid`,actor_rev_user.actor_user AS `rev_user`,actor_rev_user.actor_name AS `rev_user_text`,rev_actor,page_namespace,page_title,page_id,page_latest,page_is_redirect,page_len,user_name FROM `my_software_wiki_prefixrevision` JOIN `my_software_wiki_prefixrevision_comment_temp` `temp_rev_comment` ON ((temp_rev_comment.revcomment_rev = rev_id)) JOIN `my_software_wiki_prefixcomment` `comment_rev_comment` ON ((comment_rev_comment.comment_id = temp_rev_comment.revcomment_comment_id)) JOIN `my_software_wiki_prefixactor` `actor_rev_user` ON ((actor_rev_user.actor_id = rev_actor)) JOIN `my_software_wiki_prefixpage` ON ((page_id = rev_page)) LEFT JOIN `my_software_wiki_prefixuser` ON ((actor_rev_user.actor_user != 0) AND (user_id = actor_rev_user.actor_user)) WHERE rev_id = 129 LIMIT 1	0.0000ms	MediaWiki\Revision\RevisionStore::fetchRevisionRowFromConds
11	localhost: SELECT rev_id FROM `my_software_wiki_prefixrevision` IGNORE INDEX (rev_timestamp) WHERE rev_page = 6 AND (rev_timestamp < '20130717131503' OR (rev_timestamp = '20130717131503' AND (rev_id < 129))) ORDER BY rev_timestamp DESC,rev_id DESC LIMIT 1	0.0000ms	MediaWiki\Revision\RevisionStore::getRelativeRevision
12	localhost: SELECT rev_id,rev_page,rev_timestamp,rev_minor_edit,rev_deleted,rev_len,rev_parent_id,rev_sha1,comment_rev_comment.comment_text AS `rev_comment_text`,comment_rev_comment.comment_data AS `rev_comment_data`,comment_rev_comment.comment_id AS `rev_comment_cid`,actor_rev_user.actor_user AS `rev_user`,actor_rev_user.actor_name AS `rev_user_text`,rev_actor,page_namespace,page_title,page_id,page_latest,page_is_redirect,page_len,user_name FROM `my_software_wiki_prefixrevision` JOIN `my_software_wiki_prefixrevision_comment_temp` `temp_rev_comment` ON ((temp_rev_comment.revcomment_rev = rev_id)) JOIN `my_software_wiki_prefixcomment` `comment_rev_comment` ON ((comment_rev_comment.comment_id = temp_rev_comment.revcomment_comment_id)) JOIN `my_software_wiki_prefixactor` `actor_rev_user` ON ((actor_rev_user.actor_id = rev_actor)) JOIN `my_software_wiki_prefixpage` ON ((page_id = rev_page)) LEFT JOIN `my_software_wiki_prefixuser` ON ((actor_rev_user.actor_user != 0) AND (user_id = actor_rev_user.actor_user)) WHERE rev_id = 128 LIMIT 1	0.0000ms	MediaWiki\Revision\RevisionStore::fetchRevisionRowFromConds
13	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'deps' LIMIT 1	0.0000ms	LCStoreDB::get
14	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'list' LIMIT 1	0.0000ms	LCStoreDB::get
15	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'preload' LIMIT 1	0.0000ms	LCStoreDB::get
16	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'preload' LIMIT 1	0.0000ms	LCStoreDB::get
17	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'namespaceGenderAliases' LIMIT 1	0.0000ms	LCStoreDB::get
18	localhost: SET group_concat_max_len = 262144, `sql_mode` = ''	0.0000ms	Wikimedia\Rdbms\DatabaseMysqlBase::open
19	localhost: SELECT keyname,value,exptime FROM `my_software_wiki_prefixobjectcache` WHERE keyname = 'software-my_software_wiki_prefix:messages:en' AND (exptime >= '20250407054007')	0.0000ms	SqlBagOStuff::fetchBlobs
20	localhost: SELECT keyname,value,exptime FROM `my_software_wiki_prefixobjectcache` WHERE keyname = 'software-my_software_wiki_prefix:messages:en:status' AND (exptime >= '20250407054007')	0.0000ms	SqlBagOStuff::fetchBlobs
21	localhost: SELECT IF(GET_LOCK('software-my_software_wiki_prefix:messages:en',0),UNIX_TIMESTAMP(SYSDATE(6)),NULL) AS acquired	0.0000ms	SqlBagOStuff::doLock
22	localhost: SELECT page_title,page_latest FROM `my_software_wiki_prefixpage` WHERE page_is_redirect = 0 AND page_namespace = 8 AND (page_title NOT LIKE '%/%' ESCAPE '`' ) AND (page_len > 10000)	0.0000ms	MessageCache::loadFromDB(en)-big
23	localhost: SELECT /! STRAIGHT_JOIN / rev_id,rev_page,rev_timestamp,rev_minor_edit,rev_deleted,rev_len,rev_parent_id,rev_sha1,comment_rev_comment.comment_text AS `rev_comment_text`,comment_rev_comment.comment_data AS `rev_comment_data`,comment_rev_comment.comment_id AS `rev_comment_cid`,actor_rev_user.actor_user AS `rev_user`,actor_rev_user.actor_name AS `rev_user_text`,rev_actor,page_namespace,page_title,page_id,page_latest,page_is_redirect,page_len FROM `my_software_wiki_prefixpage` JOIN `my_software_wiki_prefixrevision` ON ((page_id = rev_page)) JOIN `my_software_wiki_prefixrevision_comment_temp` `temp_rev_comment` ON ((temp_rev_comment.revcomment_rev = rev_id)) JOIN `my_software_wiki_prefixcomment` `comment_rev_comment` ON ((comment_rev_comment.comment_id = temp_rev_comment.revcomment_comment_id)) JOIN `my_software_wiki_prefixactor` `actor_rev_user` ON ((actor_rev_user.actor_id = rev_actor)) WHERE page_is_redirect = 0 AND page_namespace = 8 AND (page_title NOT LIKE '%/%' ESCAPE '`' ) AND (page_len <= 10000) AND (page_latest = rev_id)	0.0000ms	MessageCache::loadFromDB(en)-small
24	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'list' LIMIT 1	0.0000ms	LCStoreDB::get
25	localhost: SELECT slot_revision_id,slot_content_id,slot_origin,slot_role_id,content_size,content_sha1,content_address,content_model FROM `my_software_wiki_prefixslots` JOIN `my_software_wiki_prefixcontent` ON ((slot_content_id = content_id)) WHERE slot_revision_id = 1188 AND slot_role_id = 1	0.0000ms	MediaWiki\Revision\RevisionStore::getSlotRowsForBatch
26	localhost: SELECT old_id,old_text,old_flags FROM `my_software_wiki_prefixtext` WHERE old_id = 1181	0.0000ms	MediaWiki\Storage\SqlBlobStore::fetchBlobs
27	localhost: SELECT @@server_id AS id	0.0000ms	Wikimedia\Rdbms\Replication\MysqlReplicationReporter::getServerId
28	localhost: REPLACE INTO `my_software_wiki_prefixobjectcache` (keyname,value,exptime) VALUES ('software-my_software_wiki_prefix:messages:en','■UMS■0�■■W줷LKLH\n5\'�)d■\0�■Ҟ2■-�\r■■■d�S■■we�■&Џ■■ڧ■{■!a8\n■p?■■<e■■{■&■=�■■�}■!�■■�]■■\'■■}■■V■■■■j■■Nz?@■4)■�vk■e�■X■9■■■■\Z■^■w6;■■■\Z5�p■■■�u■�■�p■■tu�■■■■■■■■��■Yb■�■\"�.n5c)�KȤ�b\n)Z■\0■�■(]■G�■■q■Y■■■■■B3ȸ■■ޟȵ■%■�:b1�■bN�■L■■■■■■X$r■■p■■+■{1■■■B■B�v■■■■Ai■■93>w■1■\|Im■■J■■:�b■■■■■�Z&■h7■■■n■o■■`■�+5■■=�■�\r■PyTe9■D■O�■b ■xB�#�^I\\■R■■\\T■a)■&�f�■�■■-■v■�:Jj■F■■�RC■■■R�■� ■■■Vy:■■■HJK%uɶ■N■■H■■�(■J\n&,■c■d■�■�■!■■v_NӰ■■\n■■■�■O■:@■■■��]■■■■■■V■=■�q■1■{��■eL3■B■`■■■C\"��■■■�g�■■■■$■\\■{[ի%■■■■\\\0■_W■6■`■\0u#_U■■■■■■■v■�<-■:■■■■■s■�■■ze■■■■■.4■dm■s■P■L■N■@%■■■�■■�■P�wW}Z■M■■&S�■�]■l■■%qY�ţh�O<■4��■�3■�■f■■xU■■{■■ŕ■Ȏ■■■o■_■■■■2■v-■X/�■■D■O�■Dse+■■■■�5■■i■A■�_6■W■.)\n■■■5y■q■wge■■t■■=w■■�■$■�■■q}yy~t■■W■\|_■■I■_Dz�■M■■■■■w■■!■■■■Y�■y■■0■�d■■■hw�wǟ■■>a�■■■■`■■■■~6■■Oao■■j:■Q■■�`��■■(8�ƣ ■■�■■\r','99991231235959')	1.0000ms	SqlBagOStuff::modifyTableSpecificBlobsForSet
29	localhost: SELECT RELEASE_LOCK('software-my_software_wiki_prefix:messages:en') AS released	0.0000ms	SqlBagOStuff::doUnlock
30	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'magicWords' LIMIT 1	0.0000ms	LCStoreDB::get
31	localhost: SELECT rev_id,rev_page,rev_timestamp,rev_minor_edit,rev_deleted,rev_len,rev_parent_id,rev_sha1,comment_rev_comment.comment_text AS `rev_comment_text`,comment_rev_comment.comment_data AS `rev_comment_data`,comment_rev_comment.comment_id AS `rev_comment_cid`,actor_rev_user.actor_user AS `rev_user`,actor_rev_user.actor_name AS `rev_user_text`,rev_actor,page_namespace,page_title,page_id,page_latest,page_is_redirect,page_len,user_name FROM `my_software_wiki_prefixrevision` JOIN `my_software_wiki_prefixrevision_comment_temp` `temp_rev_comment` ON ((temp_rev_comment.revcomment_rev = rev_id)) JOIN `my_software_wiki_prefixcomment` `comment_rev_comment` ON ((comment_rev_comment.comment_id = temp_rev_comment.revcomment_comment_id)) JOIN `my_software_wiki_prefixactor` `actor_rev_user` ON ((actor_rev_user.actor_id = rev_actor)) JOIN `my_software_wiki_prefixpage` ON ((page_id = rev_page)) LEFT JOIN `my_software_wiki_prefixuser` ON ((actor_rev_user.actor_user != 0) AND (user_id = actor_rev_user.actor_user)) WHERE rev_id = 128 LIMIT 1	0.0000ms	MediaWiki\Revision\RevisionStore::fetchRevisionRowFromConds
32	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'datePreferenceMigrationMap' LIMIT 1	0.0000ms	LCStoreDB::get
33	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'defaultDateFormat' LIMIT 1	0.0000ms	LCStoreDB::get
34	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'digitTransformTable' LIMIT 1	0.0000ms	LCStoreDB::get
35	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'messages:july' LIMIT 1	0.0000ms	LCStoreDB::get
36	localhost: SELECT page_id,page_namespace,page_title,page_is_redirect,page_is_new,page_touched,page_links_updated,page_latest,page_len,page_content_model FROM `my_software_wiki_prefixpage` WHERE page_namespace = 2 AND page_title = 'Albrecht' LIMIT 1	0.0000ms	MediaWiki\Page\PageStore::getPageByNameViaLinkCache
37	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'messages:red-link-title' LIMIT 1	0.0000ms	LCStoreDB::get
38	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'messages:talkpagelinktext' LIMIT 1	0.0000ms	LCStoreDB::get
39	localhost: SELECT page_id,page_namespace,page_title,page_is_redirect,page_is_new,page_touched,page_links_updated,page_latest,page_len,page_content_model FROM `my_software_wiki_prefixpage` WHERE page_namespace = 3 AND page_title = 'Albrecht' LIMIT 1	0.0000ms	MediaWiki\Page\PageStore::getPageByNameViaLinkCache
40	localhost: SELECT lc_value FROM `my_software_wiki_prefixl10n_cache` WHERE lc_lang = 'en' AND lc_key = 'specialPageAliases' LIMIT 1	0.0000ms	LCStoreDB::get

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NgsAdmix

Installation

Run example

Input Files

Options

Output Files

Log file

fopt file

qopt file

Plot results

citation

log

Navigation menu

Headers

Parameters