AdmixRelate: Difference between revisions
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library(relateAdmix) | library(relateAdmix) | ||
example(relate) | example(relate) | ||
</ | </pre> | ||
This shows an example of how to use the package. More information can be found in the man pages | This shows an example of how to use the package. More information can be found in the man pages | ||
Revision as of 16:41, 14 August 2013
Software for infering relatedness even if the individuals are admixted. In order to infer the relatedness you will need to known the individuals admixture proportions and the allele frequencies in each of the posible populations
Installation
Download
Installation of R package
wget http://www.popgen.dk/software/download/relateAdmix/relateAdmix_0.01.tar.gz R CMD INSTALL relateAdmix_0.01.tar.gz
Run example
Run example using R
after installing the package you can load it into R and try the example
library(relateAdmix) example(relate)
This shows an example of how to use the package. More information can be found in the man pages
?relate