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* Main | * Main | ||
* ANGSD | * ANGSD | ||
** http://popgen.dk/ | ** http://popgen.dk/angsd |Website | ||
** | * NgsRelate | ||
**http://www.popgen.dk/software/index.php/NgsRelate | Website | |||
* PCAngsd | |||
** PCAngsd|PCA, selection and inbreeding for NGS data | |||
* evalAdmix | |||
** evalAdmix| evaluate admixture fit | |||
** evalAdmix#Download_and_Installation|Download | |||
** evalAdmix#Run_command_example | Example | |||
** evalAdmix#Input_File| Input files | |||
* NGSadmix | |||
**ngsAdmix|Population Structure for NGS data | |||
** NgsAdmix#Download_and_Installation|Download | |||
** NgsAdmix#Run_command_example | Example | |||
** NgsAdmix#Input_File| Input files | |||
** NgsAdmixTutorial|Tutorial | |||
* asaMap | |||
** asaMap| Ancestry-specific association mapping in admixed populations | |||
** asaMap#Download| Download | |||
** asaMap#Example| Example | |||
** asaMap#Input_Files| Input files | |||
** asaMap#Citation| Citation | |||
* fastNGSadmix | |||
** fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample | |||
** FastNGSadmix#Download| Download | |||
** FastNGSadmix#Input_Files| Input files | |||
** FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix | |||
** FastNGSadmix#PCA| PCA | |||
** FastNGSadmix#Making_a_reference_panel| Making a reference panel | |||
** FastNGSadmix#Human_reference_panels| Human reference panels | |||
** FastNGSadmix#Citation| Citation | |||
* relateAdmix | |||
** relateAdmix|Relatedness estimation for admixed individuals | |||
** relateAdmix#Installation|Download | |||
** relateAdmix#Run_example | Example | |||
* LDadmix | |||
* Relate | * Relate | ||
** Relate|Local IBD relatedness | ** Relate|Local IBD relatedness | ||
| Line 13: | Line 47: | ||
* CATS | * CATS | ||
** CATS|power for two stage GWAS | ** CATS|power for two stage GWAS | ||
* R scripts | * R scripts | ||
** Rscripts| various R scripts | ** Rscripts| various R scripts | ||
Latest revision as of 14:19, 18 July 2019
- Main
- ANGSD
- http://popgen.dk/angsd |Website
- NgsRelate
- PCAngsd
- PCAngsd|PCA, selection and inbreeding for NGS data
- evalAdmix
- evalAdmix| evaluate admixture fit
- evalAdmix#Download_and_Installation|Download
- evalAdmix#Run_command_example | Example
- evalAdmix#Input_File| Input files
- NGSadmix
- ngsAdmix|Population Structure for NGS data
- NgsAdmix#Download_and_Installation|Download
- NgsAdmix#Run_command_example | Example
- NgsAdmix#Input_File| Input files
- NgsAdmixTutorial|Tutorial
- asaMap
- asaMap| Ancestry-specific association mapping in admixed populations
- asaMap#Download| Download
- asaMap#Example| Example
- asaMap#Input_Files| Input files
- asaMap#Citation| Citation
- fastNGSadmix
- fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample
- FastNGSadmix#Download| Download
- FastNGSadmix#Input_Files| Input files
- FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix
- FastNGSadmix#PCA| PCA
- FastNGSadmix#Making_a_reference_panel| Making a reference panel
- FastNGSadmix#Human_reference_panels| Human reference panels
- FastNGSadmix#Citation| Citation
- relateAdmix
- relateAdmix|Relatedness estimation for admixed individuals
- relateAdmix#Installation|Download
- relateAdmix#Run_example | Example
- LDadmix
- Relate
- Relate|Local IBD relatedness
- Relate#Download_and_Installation|Download
- Relate#Manual|Manual
- Relate#Citation|citation
- Relate#Change_log|Log
- BAMSE
- BAMSE| Bayesian Association of multiple SNPs
- CATS
- CATS|power for two stage GWAS
- R scripts
- Rscripts| various R scripts
- navigation
- mainpage|Software
- http://popgen.dk%7CPopgen.dk
- http://popgen.dk/wiki%7CANGSD
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