ANGSD: Analysis of next generation Sequencing Data

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MsToGlf

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For the Korneliussen2013 paper, we simulated data according to genotypes simulated from ms/msms output. For this we used the msToGlf program found in the 'misc/' subfolder of the angsd tar ball.

Brief Overview

 ./msToGlf 
Probs with args, supply -in -out
also -err -depth -depthFile -singleOut -regLen -nind

Examples

Standard neutral model

With Selection

Two populations