ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Introduction: Difference between revisions
Jump to navigation
Jump to search
(Created page with "Assuming you have a list of bamfiles in in file: 'list.txt' and you want the genotype likelihoods for position 12500000 on chromosome 8. <pre> ./angsd -bam list.txt -GL 1 -r ...") |
No edit summary |
||
| Line 2: | Line 2: | ||
<pre> | <pre> | ||
./angsd -bam list.txt -GL 1 -r chr8:12500000 | ./angsd -bam list.txt -GL 1 -r chr8:12500000 -out results | ||
</pre> | </pre> | ||
This is using the SAMtools model for calculating genotype likelihoods see [Genotype likelihoods] for other models. | |||
Revision as of 09:07, 23 October 2012
Assuming you have a list of bamfiles in in file: 'list.txt' and you want the genotype likelihoods for position 12500000 on chromosome 8.
./angsd -bam list.txt -GL 1 -r chr8:12500000 -out results
This is using the SAMtools model for calculating genotype likelihoods see [Genotype likelihoods] for other models.