ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Installation

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Download

The source code is avaible as a tarball and be download here [1]

Earlier versions from here: http://popgen.dk/software/download/angsd/

An earlier version has been modified (by Filipe Vieira) to estimate and take into account inbreeding for some analysis. This version has not been tested and validated.


The inbreeding version can be found here [2].

Install

Unpack the tarball

Unix

The software can be compiled using make

cd angsd0.512
make

zlib needs to be installed on your system.