ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Installation: Difference between revisions

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=Install=
=Install=
Unpack the tarball
Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
 
===Unix===
===Unix===
The software can be compiled using make. zlib needs to be installed on your system.
The software can be compiled using make. zlib needs to be installed on your system.

Revision as of 18:54, 10 October 2013

Download

The latest version of the source code is avaible as a tarball and be download here [1]

Earlier versions from here: http://popgen.dk/software/download/angsd/

You might also be interested in a version where we allow for deviations from HWE such as inbreeding. This can be found here [2]

Install

Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.

Unix

The software can be compiled using make. zlib needs to be installed on your system.

wget http://popgen.dk/software/download/angsd/angsd0.553.tar.gz
tar xfz angsd0.553.tar.gz
cd angsd0.553
make
cd ..

Or for users who prefer the last super stable release.

wget http://popgen.dk/software/download/angsd/angsd0.538.tar.gz
tar xfz angsd0.538.tar.gz
cd angsd0.538
make
cd ..

Or for users who prefer the inbreeding version.

wget http://popgen.dk/software/download/angsd/angsd0.543i.tar.gz
tar xfz angsd0.543i.tar.gz
cd angsd0.543i
make
cd ..