ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
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Unpack the tarball | Unpack the tarball | ||
===Unix=== | ===Unix=== | ||
The software can be compiled using make | The software can be compiled using make. zlib needs to be installed on your system. | ||
<pre> | |||
wget http://popgen.dk/software/download/angsd/angsd0.553.tar.gz | |||
tar xfz angsd0.553.tar.gz | |||
cd angsd0.553 | |||
make | |||
cd .. | |||
</pre> | |||
Or for users who prefer the last super stable release. | |||
<pre> | <pre> | ||
wget http://popgen.dk/software/download/angsd/angsd0.538.tar.gz | wget http://popgen.dk/software/download/angsd/angsd0.538.tar.gz | ||
| Line 20: | Line 29: | ||
cd .. | cd .. | ||
</pre> | </pre> | ||
Or users | Or for users who prefer the inbreeding version. | ||
<pre> | <pre> | ||
wget http://popgen.dk/software/download/angsd/angsd0. | wget http://popgen.dk/software/download/angsd/angsd0.543i.tar.gz | ||
tar xfz angsd0. | tar xfz angsd0.543i.tar.gz | ||
cd angsd0. | cd angsd0.543i | ||
make | make | ||
cd .. | cd .. | ||
</pre> | </pre> | ||
Revision as of 18:00, 10 October 2013
Download
The latest version of the source code is avaible as a tarball and be download here [1]
Earlier versions from here: http://popgen.dk/software/download/angsd/
You might also be interested in a version where we allow for deviations from HWE such as inbreeding. This can be found here [2]
Install
Unpack the tarball
Unix
The software can be compiled using make. zlib needs to be installed on your system.
wget http://popgen.dk/software/download/angsd/angsd0.553.tar.gz tar xfz angsd0.553.tar.gz cd angsd0.553 make cd ..
Or for users who prefer the last super stable release.
wget http://popgen.dk/software/download/angsd/angsd0.538.tar.gz tar xfz angsd0.538.tar.gz cd angsd0.538 make cd ..
Or for users who prefer the inbreeding version.
wget http://popgen.dk/software/download/angsd/angsd0.543i.tar.gz tar xfz angsd0.543i.tar.gz cd angsd0.543i make cd ..