Revision as of 12:28, 18 June 2015

Download and Installation

To download and use ANGSD you need to download the htslib and the angsd source folder

You can either download the angsd0.901.tar.gz which contains both. [1]

Or you can use github for the latest version of both htslib and angsd

To install CRAM support you also need to install htslib and can be done using the following commands

git clone https://github.com/samtools/htslib.git
git clone git://github.com/ANGSD/angsd.git 
cd angsd
make

@@ Line 9: / Line 9: @@
 Earlier versions from here: http://popgen.dk/software/download/angsd/
 And here: https://github.com/ANGSD/angsd/releases
-=Install=
-Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
-===Unix===
-The software can be compiled using make. zlib needs to be installed on your system.
-<pre>
-wget http://popgen.dk/software/download/angsd/angsd0.901.tar.gz
-tar xfz angsd0.901.tar.gz
-cd angsd
-make
-cd ..
-</pre>
-The executable then located in '''angsd/angsd'''.
 =Install from github=