ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| Line 7: | Line 7: | ||
Latest dev version can be found on github: https://github.com/ANGSD/angsd | Latest dev version can be found on github: https://github.com/ANGSD/angsd | ||
The branch '''withhtslib''' now supports cram reading. | |||
=Install= | =Install= | ||
Revision as of 23:23, 24 February 2015
Download
The latest stabile version of the source code is avaible as a tarball and be download here [1]
Earlier versions from here: http://popgen.dk/software/download/angsd/
Latest dev version can be found on github: https://github.com/ANGSD/angsd
The branch withhtslib now supports cram reading.
Install
Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
Unix
The software can be compiled using make. zlib needs to be installed on your system.
wget http://popgen.dk/software/download/angsd/angsd0.615.tar.gz tar xfz angsd0.615.tar.gz cd angsd0.615 make cd ..
The executable then located in angsd0.615/angsd.
- NB the program also compiles a static version called angsd0.615/angsd.static which could be usefull.