ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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anders albrechtsen | anders albrechtsen | ||
albrecht@binf.ku.dk | albrecht@binf.ku.dk | ||
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Fililpe Vieira has been implementing changes to the frequency estimator. | |||
analysisMaf.cpp -> analysisMaf.inbreed.cpp | |||
some changes in angsd_realSFS.cpp | |||
And the analysisHWE.cpp | |||
Matteo has been implementing the Fst and PCA which uses output from angsd. | |||
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flotte@skotte.dk | flotte@skotte.dk | ||
==Disclaimer== | ==Disclaimer== | ||
Some code is very 'inspired' by [http://samtools.sourceforge.net/ SAMtools] (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by [http://genome.cshlp.org/content/19/6/1124.full SOAPsnp] | Some code is very 'inspired' by [http://samtools.sourceforge.net/ SAMtools] (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by [http://genome.cshlp.org/content/19/6/1124.full SOAPsnp] | ||
Latest revision as of 13:50, 28 June 2013
Major programmer
Thorfinn Korneliussen thorfinn@binf.ku.dk
Minor programmer
anders albrechtsen albrecht@binf.ku.dk
Fililpe Vieira has been implementing changes to the frequency estimator. analysisMaf.cpp -> analysisMaf.inbreed.cpp some changes in angsd_realSFS.cpp And the analysisHWE.cpp
Matteo has been implementing the Fst and PCA which uses output from angsd.
Other people include
Rasmus Nielsen rasmus@binf.ku.dk
Line Skotte flotte@skotte.dk
Disclaimer
Some code is very 'inspired' by SAMtools (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by SOAPsnp