ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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3 October 2013
- 14:1314:13, 3 October 2013 diff hist +382 Thetas,Tajima,Neutrality tests No edit summary
- 14:0314:03, 3 October 2013 diff hist +70 Korneliussen2013 No edit summary current
- 14:0214:02, 3 October 2013 diff hist +60 Korneliussen2013 No edit summary
- 14:0114:01, 3 October 2013 diff hist +78 Thetas,Tajima,Neutrality tests No edit summary
2 October 2013
- 19:0719:07, 2 October 2013 diff hist +1,888 Korneliussen2013 →Bibtex
- 18:3418:34, 2 October 2013 diff hist +33 Thetas,Tajima,Neutrality tests No edit summary
- 18:3218:32, 2 October 2013 diff hist +262 N Korneliussen2013 Created page with "Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen and Rasmus Nielsen; Calculation of Tajima's D and other neutrality test statistics from low depth next-generation se..."
- 18:2818:28, 2 October 2013 diff hist +57 Citing angsd →SFS estimation
30 September 2013
- 08:1708:17, 30 September 2013 diff hist −10 Base quality →options current
- 08:1608:16, 30 September 2013 diff hist −51 Allele Counts →options
- 08:1508:15, 30 September 2013 diff hist −5 Allele Counts →options
- 08:1408:14, 30 September 2013 diff hist −27 Filters →Number of non missing individuals
26 September 2013
- 10:0510:05, 26 September 2013 diff hist +501 SFS Estimation →NB
12 September 2013
- 19:0619:06, 12 September 2013 diff hist +44 Change log →Version notes
- 19:0519:05, 12 September 2013 diff hist 0 Installation →Unix
- 19:0319:03, 12 September 2013 diff hist 0 ANGSD No edit summary
- 19:0219:02, 12 September 2013 diff hist +15 MediaWiki:Sidebar No edit summary
- 19:0119:01, 12 September 2013 diff hist +102 Plink →Output files
- 19:0019:00, 12 September 2013 diff hist +1,261 Plink →Output files
- 18:5818:58, 12 September 2013 diff hist +317 Plink →Output files
- 18:5718:57, 12 September 2013 diff hist −6 Plink →Output files
- 18:5618:56, 12 September 2013 diff hist +82 Plink →Example
- 18:5418:54, 12 September 2013 diff hist +46 Plink →References
- 18:5418:54, 12 September 2013 diff hist +245 Plink No edit summary
- 18:4918:49, 12 September 2013 diff hist +16 Plink No edit summary
- 18:4818:48, 12 September 2013 diff hist +11 Plink No edit summary
- 18:4818:48, 12 September 2013 diff hist +478 Plink No edit summary
- 18:4418:44, 12 September 2013 diff hist +128 Plink No edit summary
- 18:4218:42, 12 September 2013 diff hist +174 Plink No edit summary
- 18:4118:41, 12 September 2013 diff hist +69 Plink No edit summary
- 18:4018:40, 12 September 2013 diff hist +110 N Plink Created page with "From version 0.549 we now support plink output files. Currently we only support the transposed '.tfam'/'.tped'"
4 September 2013
- 19:0319:03, 4 September 2013 diff hist +297 ANGSD No edit summary
- 19:0019:00, 4 September 2013 diff hist 0 Installation No edit summary
22 July 2013
- 14:4214:42, 22 July 2013 diff hist +51 Thetas,Tajima,Neutrality tests No edit summary
- 14:3614:36, 22 July 2013 diff hist +39 MediaWiki:Sidebar No edit summary
18 July 2013
- 00:4000:40, 18 July 2013 diff hist +82 NGSadmix No edit summary
- 00:2800:28, 18 July 2013 diff hist +3 Sites →Selected Sites
- 00:2700:27, 18 July 2013 diff hist +1 Sites →Selected Sites
- 00:2600:26, 18 July 2013 diff hist +82 Sites →Selected Sites
- 00:2500:25, 18 July 2013 diff hist −5 Sites →Number of non missing individuals
- 00:2500:25, 18 July 2013 diff hist +332 Sites →Selected Sites
- 00:2300:23, 18 July 2013 diff hist −7 Sites →Selected Sites
- 00:2200:22, 18 July 2013 diff hist −782 Sites →Selected Sites
- 00:1600:16, 18 July 2013 diff hist −116 Sites →Main
- 00:1600:16, 18 July 2013 diff hist +1 Filters →Version Notice
- 00:1500:15, 18 July 2013 diff hist +129 Filters No edit summary
- 00:1400:14, 18 July 2013 diff hist +90 Sites No edit summary
- 00:1300:13, 18 July 2013 diff hist +4,297 N Sites Created page with "In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options. NB the afile.keep is still beta and some use..."
- 00:1200:12, 18 July 2013 diff hist +93 ANGSD No edit summary
- 00:0200:02, 18 July 2013 diff hist +205 Installation →Install