Thetas,Tajima,Neutrality tests: Revision history

1 April 2020

• curprev 11:5611:56, 1 April 2020‎ Thorfinn talk contribs‎ 15,381 bytes −493‎ →‎Unknown ancestral state (folded sfs)
• curprev 11:5211:52, 1 April 2020‎ Thorfinn talk contribs‎ 15,874 bytes −38‎ →‎Step 2: Calculate the thetas for each site

29 May 2017

• curprev 20:5320:53, 29 May 2017‎ Thorfinn talk contribs‎ 15,912 bytes 0‎ →‎Example Output

8 February 2017

• curprev 17:5917:59, 8 February 2017‎ Thorfinn talk contribs‎ 15,912 bytes +1‎ →‎.thetas.gz.pestPG
• curprev 17:5817:58, 8 February 2017‎ Thorfinn talk contribs‎ 15,911 bytes +64‎ →‎Example
• curprev 17:5717:57, 8 February 2017‎ Thorfinn talk contribs‎ 15,847 bytes +1‎ →‎./thetaStat print angsdput.thetas.gz
• curprev 17:5617:56, 8 February 2017‎ Thorfinn talk contribs‎ 15,846 bytes +42‎ →‎Example Output
• curprev 17:5517:55, 8 February 2017‎ Thorfinn talk contribs‎ 15,804 bytes +1‎ →‎Step 3b: Sliding Window example
• curprev 17:5417:54, 8 February 2017‎ Thorfinn talk contribs‎ 15,803 bytes +2‎ →‎Step 3a: Estimate Tajimas D and other statistics
• curprev 17:5417:54, 8 February 2017‎ Thorfinn talk contribs‎ 15,801 bytes +1‎ →‎Full command list for below examples
• curprev 17:5017:50, 8 February 2017‎ Thorfinn talk contribs‎ 15,800 bytes −112‎ →‎Unknown ancestral state (folded sfs)
• curprev 17:4917:49, 8 February 2017‎ Thorfinn talk contribs‎ 15,912 bytes −14‎ →‎Step 3b: Sliding Window example
• curprev 17:4817:48, 8 February 2017‎ Thorfinn talk contribs‎ 15,926 bytes −157‎ →‎Step 3a: Estimate Tajimas D and other statistics
• curprev 17:4717:47, 8 February 2017‎ Thorfinn talk contribs‎ 16,083 bytes +6‎ →‎Step 3a: Estimate Tajimas D and other statistics
• curprev 17:4517:45, 8 February 2017‎ Thorfinn talk contribs‎ 16,077 bytes −101‎ →‎Step 3a: Estimate Tajimas D and other statistics
• curprev 17:4517:45, 8 February 2017‎ Thorfinn talk contribs‎ 16,178 bytes −35‎ →‎Step 2: Calculate the thetas for each site
• curprev 17:4417:44, 8 February 2017‎ Thorfinn talk contribs‎ 16,213 bytes −86‎ →‎Step 2: Calculate the thetas for each site
• curprev 17:4117:41, 8 February 2017‎ Thorfinn talk contribs‎ 16,299 bytes +145‎ →‎Step 2: Calculate the thetas for each site
• curprev 17:3917:39, 8 February 2017‎ Thorfinn talk contribs‎ 16,154 bytes −57‎ →‎Full command list for below examples
• curprev 17:3917:39, 8 February 2017‎ Thorfinn talk contribs‎ 16,211 bytes +14‎ →‎Example
• curprev 17:3817:38, 8 February 2017‎ Thorfinn talk contribs‎ 16,197 bytes +13‎ No edit summary

26 August 2016

• curprev 08:5208:52, 26 August 2016‎ Thorfinn talk contribs‎ 16,184 bytes 0‎ No edit summary
• curprev 08:5108:51, 26 August 2016‎ Thorfinn talk contribs‎ 16,184 bytes 0‎ →‎Step 1: Finding a 'global estimate' of the SFS
• curprev 08:5008:50, 26 August 2016‎ Thorfinn talk contribs‎ 16,184 bytes 0‎ No edit summary

5 February 2016

• curprev 16:4216:42, 5 February 2016‎ Thorfinn talk contribs‎ 16,184 bytes −5‎ →‎Step 1: Finding a 'global estimate' of the SFS

19 October 2015

• curprev 17:5217:52, 19 October 2015‎ Thorfinn talk contribs‎ 16,189 bytes −79‎ →‎Unknown ancestral state (folded sfs)
• curprev 17:5217:52, 19 October 2015‎ Thorfinn talk contribs‎ 16,268 bytes +1‎ →‎Step 1: Finding a 'global estimate' of the SFS
• curprev 17:5117:51, 19 October 2015‎ Thorfinn talk contribs‎ 16,267 bytes +1‎ updatated the examples for latest version of realSFS, thanks kebi
• curprev 17:5017:50, 19 October 2015‎ Thorfinn talk contribs‎ 16,266 bytes +1‎ →‎Full command list for below examples

3 November 2014

• curprev 19:5119:51, 3 November 2014‎ Thorfinn talk contribs‎ 16,265 bytes +170‎ →‎Example Output

30 June 2014

• curprev 13:1513:15, 30 June 2014‎ Thorfinn talk contribs‎ 16,095 bytes +4‎ →‎Step 3a: Estimate Tajimas D and other statistics
• curprev 13:1513:15, 30 June 2014‎ Thorfinn talk contribs‎ 16,091 bytes +2‎ →‎Step 1: Finding a 'global estimate' of the SFS
• curprev 13:1513:15, 30 June 2014‎ Thorfinn talk contribs‎ 16,089 bytes +8‎ →‎Full command list for below examples
• curprev 13:0113:01, 30 June 2014‎ Thorfinn talk contribs‎ 16,081 bytes −2‎ →‎Step 2: Calculate the thetas for each site
• curprev 13:0013:00, 30 June 2014‎ Thorfinn talk contribs‎ 16,083 bytes −2‎ →‎Step 1: Finding a 'global estimate' of the SFS
• curprev 13:0013:00, 30 June 2014‎ Thorfinn talk contribs‎ 16,085 bytes +783‎ →‎Example
• curprev 12:5812:58, 30 June 2014‎ Thorfinn talk contribs‎ 15,302 bytes −567‎ →‎Full command list for above examples
• curprev 12:5812:58, 30 June 2014‎ Thorfinn talk contribs‎ 15,869 bytes +1‎ →‎=Step 3b: Sliding Window example
• curprev 12:5812:58, 30 June 2014‎ Thorfinn talk contribs‎ 15,868 bytes +10‎ →‎Sliding Window example
• curprev 12:5812:58, 30 June 2014‎ Thorfinn talk contribs‎ 15,858 bytes +1‎ →‎Step 3: Estimate Tajimas D and other statistics
• curprev 12:5712:57, 30 June 2014‎ Thorfinn talk contribs‎ 15,857 bytes +77‎ →‎Full command list for above examples
• curprev 12:5612:56, 30 June 2014‎ Thorfinn talk contribs‎ 15,780 bytes +433‎ →‎Full command list for above examples
• curprev 12:5412:54, 30 June 2014‎ Thorfinn talk contribs‎ 15,347 bytes +57‎ →‎Example Output
• curprev 12:5312:53, 30 June 2014‎ Thorfinn talk contribs‎ 15,290 bytes −6‎ →‎Output of the .thetas.gz file
• curprev 12:5312:53, 30 June 2014‎ Thorfinn talk contribs‎ 15,296 bytes +7‎ →‎Estimate Tajimas D and other statistics
• curprev 12:5212:52, 30 June 2014‎ Thorfinn talk contribs‎ 15,289 bytes −1‎ →‎Estimate Tajimas D and other statistics
• curprev 12:5212:52, 30 June 2014‎ Thorfinn talk contribs‎ 15,290 bytes +1‎ →‎Step2: Calculate the thetas for each site
• curprev 12:5212:52, 30 June 2014‎ Thorfinn talk contribs‎ 15,289 bytes −2‎ →‎Step 1: Finding a 'global estimate' of the SFS
• curprev 12:5112:51, 30 June 2014‎ Thorfinn talk contribs‎ 15,291 bytes +7‎ →‎Calculate the thetas for each site
• curprev 12:5112:51, 30 June 2014‎ Thorfinn talk contribs‎ 15,284 bytes +4,293‎ →‎Estimate Tajimas D and other statistics