ANGSD: Analysis of next generation Sequencing Data
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- Line Skotte ...701 bytes (105 words) - 13:50, 28 June 2013
- Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing ...551 bytes (61 words) - 11:27, 29 June 2013
- ...on of interest then you can supply a file containing your regions, one per line. ...647 bytes (101 words) - 15:37, 29 June 2012
- ...Example of the depth of 10 individuals. Each line corresponce to the same line in the postion file. ...f the four bases across all individuals. Each line corresponce to the same line in the postion file. ...7 KB (813 words) - 06:34, 2 May 2020
- So each line in your Whit.saf.ml, is an SFS for a region. For 2dsfs the results is a single line, assuming we have n categories in population1 and m categories in populatio ...5 KB (881 words) - 13:20, 26 June 2022
- Each line represents a block with a chromsome name (Column 1), a start position (Colu ...containing 3 individuals affected by transition error goes from line 6 to line 8 in the file bam.filelist. We select those individuals and write them in a ...11 KB (1,801 words) - 11:34, 26 June 2018
- Output: Each line represents site. chromsome name (Column 1), position (Column 2), major alle ...2 KB (433 words) - 11:21, 27 October 2020
- ...ould really choose a much larger number of sites to do this analysis. Each line has 16 entries corresponding to the type specific errors for a region of '' NB Currently the ordering of each line, can not be interpreted as the error rates along the genome, due to the thr ...10 KB (1,356 words) - 13:57, 12 January 2017
- maximum bytes per line. Increase if the pileup has many individuals. maximum bytes per line. Increase if the pileup has many individuals. ...18 KB (2,471 words) - 10:57, 28 September 2021
- This can be done easily at the command line by adding the below commands ...g missing phenotypes. The file should contain a single phenotype entry per line. ...22 KB (3,264 words) - 15:32, 7 June 2023
- Assuming the we have obtained a single global sfs(only one line in the output) from '''realSFS''' program, and this is located in '''file.s If your output from '''realSFS''' contains more than one line, it is because you have estimated multiple local SFS's. Then you can't use ...12 KB (1,931 words) - 16:22, 8 December 2023
- ...nd therefore needs [[Alleles_counts]] "-doCounts 1". The error file is one line of 16 values as outputted from -doError ...10 KB (1,409 words) - 10:56, 28 September 2021
- ...ut msg for 'if you really want angsd to exit'. Maybe fixed an unknown bug. line 2 in .arg or screen output is now commandline used, and some other visual s ...12 KB (1,833 words) - 13:59, 16 July 2022