FastNgsAdmixOld

This page contains information about the program called FastNGSadmix, which is a very fast tool for finding admixture proportions from NGS data of a single individual. It is based on genotype likelihoods. The program is written in R.

Installation

wget popgen.dk/??
OR
Use shiny: popgen.dk/???

Run example

First download some example test files which has been generated on basis of data from the 1000 genomes project.

wget popgen.dk/??????/popfreq.RData
wget popgen.dk/??????

HOME$ Rscript NGS_Admix_rscript.r beagle_GL='indi_genotypelikelihood.beagle'  popfreq_RDATA='pop_freq_all.RData' outputfile='test'