NgsAdmix: Difference between revisions
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The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles [http://faculty.washington.edu/browning/beagle/beagle.html]. We recommend [[ANGSD]] for easy transformation of Next generation sequencing data to beagle format. | The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles [http://faculty.washington.edu/browning/beagle/beagle.html]. We recommend [[ANGSD]] for easy transformation of Next generation sequencing data to beagle format. | ||
=log= | =log= | ||
* v32 june 25-2013; modified code such that it now compiles on OSX | * v32 june 25-2013; modified code such that it now compiles on OSX | ||
* v31 june 24-2013; First public version. | * v31 june 24-2013; First public version. | ||
Revision as of 10:29, 25 June 2013
This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities. It is a fancy multithreaded c/c++ program
Installation
wget popgen.dk/software/NGSadmix/ngsadmix32.cpp g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix
Input Files
The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles [1]. We recommend ANGSD for easy transformation of Next generation sequencing data to beagle format.
log
- v32 june 25-2013; modified code such that it now compiles on OSX
- v31 june 24-2013; First public version.