NgsAdmix: Difference between revisions
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This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities. | |||
It is a fancy multithreaded c/c++ program | |||
=Installation= | |||
<pre> | |||
wget popgen.dk/software/NGSadmix/ngsadmix32.cpp | |||
g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix | |||
</pre> | |||
=Input Files= | |||
The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles. We recommend [[www.popgen.dk/angsd ANGSD]] | |||
=log= | |||
* v32 june 25-2013; modified code such that it now compiles on OSX | |||
* v31 june 24-2013; First public version. | |||
Revision as of 10:20, 25 June 2013
This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities. It is a fancy multithreaded c/c++ program
Installation
wget popgen.dk/software/NGSadmix/ngsadmix32.cpp g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix
Input Files
The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles. We recommend www.popgen.dk/angsd ANGSD
log
- v32 june 25-2013; modified code such that it now compiles on OSX
- v31 june 24-2013; First public version.