|
|
| Line 1: |
Line 1: |
| This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities.
| |
| It is a fancy multithreaded c/c++ program
| |
|
| |
|
| =Installation=
| |
|
| |
| <pre>
| |
| wget popgen.dk/software/NGSadmix/ngsadmix32.cpp
| |
| g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix
| |
| </pre>
| |
|
| |
| =Input Files=
| |
| The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles. We recommend [[www.popgen.dk/angsd ANGSD]]
| |
|
| |
|
| |
| =log=
| |
| * v32 june 25-2013; modified code such that it now compiles on OSX
| |
| * v31 june 24-2013; First public version.
| |