Sortdep: Difference between revisions
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=Installation= | =Installation= | ||
<pre> | <pre> | ||
wget http://popgen.dk/software/download/sortDep.cpp | |||
g++ sortDep.cpp -O3 -o sortDep -lz | |||
</pre> | </pre> | ||
Revision as of 15:35, 19 March 2014
A ultrafast and efficient tabulation of integers.
Very usefull for finding coverage and depth of coverage of sequencing data.
The functionality is similar to sort -n depths.txt |uniq -c.
Installation
wget http://popgen.dk/software/download/sortDep.cpp g++ sortDep.cpp -O3 -o sortDep -lz