NgsAdmix: Difference between revisions
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The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles. We recommend [[ANGSD]] for easy transformation of Next generation sequencing data to beagle format. | The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles. We recommend [[ANGSD]] for easy transformation of Next generation sequencing data to beagle format. | ||
<ref>Smith 2010, p. 1.</ref> | |||
=log= | =log= | ||
* v32 june 25-2013; modified code such that it now compiles on OSX | * v32 june 25-2013; modified code such that it now compiles on OSX | ||
* v31 june 24-2013; First public version. | * v31 june 24-2013; First public version. | ||
Revision as of 10:23, 25 June 2013
This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities. It is a fancy multithreaded c/c++ program
Installation
wget popgen.dk/software/NGSadmix/ngsadmix32.cpp g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix
Input Files
The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles. We recommend ANGSD for easy transformation of Next generation sequencing data to beagle format.
log
- v32 june 25-2013; modified code such that it now compiles on OSX
- v31 june 24-2013; First public version.
- ↑ Smith 2010, p. 1.