HMMld finds pairwise relatedness

Documentation for package ‘Relate’ version 0.987

getPed	A function to extract values from a snpMatrix object,snp.support and subject.support
getPlink	Read a PLINK binary data file as a list of chromosomes, genotypes and positions
ld.snp3	Function to calculate pairwise D', r-squared, but also haplotype frequencies
plot.HMMrelate	R generic plot function used for plotting runHmmld.* functions
print.HMMrelate	prints the results for runHMMld
runHmmld	A function for estimating relatedness between to individuals using SNP data
runHmmld.ped	A function for estimating relatedness between to individuals using SNP data, This function should only be used if you have a 'snpMatrix object' and corrosponding 'subject.support' and 'snp.support'
runHmmld.plink	A function using plink binary data for estimating relatedness between to individuals using SNP data
sim_chr	Program used to generate data