getPed |
A function to extract values from a snpMatrix object,snp.support and subject.support |
getPlink |
Read a PLINK binary data file as a list of chromosomes, genotypes and positions |
ld.snp3 |
Function to calculate pairwise D', r-squared, but also haplotype frequencies |
plot.HMMrelate |
R generic plot function used for plotting runHmmld.* functions |
print.HMMrelate |
prints the results for runHMMld |
runHmmld |
A function for estimating relatedness between to individuals using SNP data |
runHmmld.ped |
A function for estimating relatedness between to individuals using SNP data, This function should only be used if you have a 'snpMatrix object' and corrosponding 'subject.support' and 'snp.support' |
runHmmld.plink |
A function using plink binary data for estimating relatedness between to individuals using SNP data |
sim_chr |
Program used to generate data |