1	#1=allpairs	0=normal run
8	#pair[0]	
9	#pair[1]
0	#double recombination
0 #LD=0=rsq2	LD=1=D //allright everythings gone be allright
0.025 #  	min
0.001	# alim[0]
5.0	# alim[1]
0	#doParameter calculation (pars)
0.3	# par[0] = a  this is only used if doParameter is set to 1
0.25 #	par[1] = k2 this is only used if doParameter is set to 1
0.5	# par[2] = k1 this is only used if doParameter is set to 1
1	#ld_adj
0.01	#epsilon
50	#back
0 #doPrune
0.1	#prune_value
0	#fixA
0.0	#fixA_value
1	#fixK2
0.0	#fixk2_value
1	#calculateA
0.013	#phi_value
0.1	#convergence_tolerance
3	#times_to_converge
8	#times_to_run
100 #back2