BAMSE-package |
Package for analysis for BAMSE output data |
BAMSE |
Package for analysis for BAMSE output data |
findRisk |
~~function to do ... ~~ |
geo |
~~function to do ... ~~ |
mcmc.diag |
function to perform convergence diagnostic |
mcmc.risksets |
This function performs clustering of the risk sets |
mcmc.risksets2 |
This function performs clustering of the risk sets |
plot.geno |
Plots the posterior probabilities for a SNP or an combination for SNPs |
plot.geno.mean |
Plots the posterior distribution for the components |
plot.like |
Plots the trace of the sampled likelihood scores |
plot.misc |
Displays the trace of the parameters from the mcmc output |
plot.priors |
Plot the priors |
plot.riskset |
displays the posterior distribution of the number of risk set |
plot.standard |
Displays the main result of the BAMSE method |
plot.visit |
Displays the posterior probabilities for a risk set cpmponent being part of a risk set |
plot.visit2 |
plot the frequencies of the visits to the different risk set components |
print.BAMSE |
~~function to do ... ~~ |
print.mcmc.risksets |
print the results from the mcmc.risksets function |
print.plot.riskset |
displays the posterior distribution of the number of risk set |
print.visit |
~~function to do ... ~~ |
read.mcmc |
Read BAMSE output |
sorter |
~~function to do ... ~~ |
visit2 |
plot the frequencies of the visits to the different risk set components |
with.p |
Posterior probabilities and p-values |