Analysis of BAMSE output

Documentation for package `BAMSE' version 2.0

BAMSE-package	Package for analysis for BAMSE output data
BAMSE	Package for analysis for BAMSE output data
findRisk	~~function to do ... ~~
geo	~~function to do ... ~~
mcmc.diag	function to perform convergence diagnostic
mcmc.risksets	This function performs clustering of the risk sets
mcmc.risksets2	This function performs clustering of the risk sets
plot.geno	Plots the posterior probabilities for a SNP or an combination for SNPs
plot.geno.mean	Plots the posterior distribution for the components
plot.like	Plots the trace of the sampled likelihood scores
plot.misc	Displays the trace of the parameters from the mcmc output
plot.priors	Plot the priors
plot.riskset	displays the posterior distribution of the number of risk set
plot.standard	Displays the main result of the BAMSE method
plot.visit	Displays the posterior probabilities for a risk set cpmponent being part of a risk set
plot.visit2	plot the frequencies of the visits to the different risk set components
print.BAMSE	~~function to do ... ~~
print.mcmc.risksets	print the results from the mcmc.risksets function
print.plot.riskset	displays the posterior distribution of the number of risk set
print.visit	~~function to do ... ~~
read.mcmc	Read BAMSE output
sorter	~~function to do ... ~~
visit2	plot the frequencies of the visits to the different risk set components
with.p	Posterior probabilities and p-values