Analysis of BAMSE output


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Documentation for package `BAMSE' version 2.0

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BAMSE-package Package for analysis for BAMSE output data
BAMSE Package for analysis for BAMSE output data
findRisk ~~function to do ... ~~
geo ~~function to do ... ~~
mcmc.diag function to perform convergence diagnostic
mcmc.risksets This function performs clustering of the risk sets
mcmc.risksets2 This function performs clustering of the risk sets
plot.geno Plots the posterior probabilities for a SNP or an combination for SNPs
plot.geno.mean Plots the posterior distribution for the components
plot.like Plots the trace of the sampled likelihood scores
plot.misc Displays the trace of the parameters from the mcmc output
plot.priors Plot the priors
plot.riskset displays the posterior distribution of the number of risk set
plot.standard Displays the main result of the BAMSE method
plot.visit Displays the posterior probabilities for a risk set cpmponent being part of a risk set
plot.visit2 plot the frequencies of the visits to the different risk set components
print.BAMSE ~~function to do ... ~~
print.mcmc.risksets print the results from the mcmc.risksets function
print.plot.riskset displays the posterior distribution of the number of risk set
print.visit ~~function to do ... ~~
read.mcmc Read BAMSE output
sorter ~~function to do ... ~~
visit2 plot the frequencies of the visits to the different risk set components
with.p Posterior probabilities and p-values