ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Pages with the most revisions

Jump to navigation Jump to search

Showing below up to 93 results in range #1 to #93.

View (previous 100 | next 100) (20 | 50 | 100 | 250 | 500)

  1. SFS Estimation‏‎ (267 revisions)
  2. Association‏‎ (189 revisions)
  3. Genotype Likelihoods‏‎ (161 revisions)
  4. Thetas,Tajima,Neutrality tests‏‎ (154 revisions)
  5. Installation‏‎ (151 revisions)
  6. ANGSD‏‎ (141 revisions)
  7. Input‏‎ (125 revisions)
  8. Error estimation‏‎ (105 revisions)
  9. Change log‏‎ (104 revisions)
  10. Filters‏‎ (86 revisions)
  11. Quick Start‏‎ (82 revisions)
  12. Allele Frequencies‏‎ (71 revisions)
  13. Allele Counts‏‎ (62 revisions)
  14. Fst PCA‏‎ (60 revisions)
  15. Fasta‏‎ (60 revisions)
  16. Abbababa2‏‎ (54 revisions)
  17. RealSFS‏‎ (54 revisions)
  18. Bugs‏‎ (50 revisions)
  19. Major Minor‏‎ (46 revisions)
  20. Sites‏‎ (45 revisions)
  21. 2d SFS Estimation‏‎ (43 revisions)
  22. Tutorial‏‎ (39 revisions)
  23. Thorfinn‏‎ (39 revisions)
  24. PCA MDS‏‎ (39 revisions)
  25. MsToGlf‏‎ (39 revisions)
  26. Abbababa‏‎ (31 revisions)
  27. Contamination‏‎ (29 revisions)
  28. Genotype calling‏‎ (27 revisions)
  29. Plink‏‎ (24 revisions)
  30. Citing angsd‏‎ (23 revisions)
  31. Fst‏‎ (23 revisions)
  32. Relatedness‏‎ (21 revisions)
  33. Safv3‏‎ (20 revisions)
  34. HWE and Inbreeding estimates‏‎ (20 revisions)
  35. HWE test‏‎ (19 revisions)
  36. SnpFilters‏‎ (18 revisions)
  37. Heterozygosity‏‎ (16 revisions)
  38. Authors‏‎ (14 revisions)
  39. Depth‏‎ (13 revisions)
  40. Beagle input‏‎ (13 revisions)
  41. Angsd structure‏‎ (11 revisions)
  42. NGSadmix‏‎ (10 revisions)
  43. Haploid calling‏‎ (9 revisions)
  44. Glcomparison‏‎ (8 revisions)
  45. Introduction‏‎ (8 revisions)
  46. SNP calling‏‎ (8 revisions)
  47. Genotype likelihoods from alignments new‏‎ (8 revisions)
  48. Base quality‏‎ (7 revisions)
  49. PCA‏‎ (7 revisions)
  50. Genotype Distribution‏‎ (6 revisions)
  51. Mismatch‏‎ (5 revisions)
  52. Vcf‏‎ (5 revisions)
  53. Korneliussen2013‏‎ (4 revisions)
  54. Misc example‏‎ (4 revisions)
  55. Skotte2012‏‎ (4 revisions)
  56. Nielsen2012‏‎ (4 revisions)
  57. RealSFSmethod‏‎ (3 revisions)
  58. Changes‏‎ (3 revisions)
  59. Regionfile‏‎ (3 revisions)
  60. SNP Calling‏‎ (3 revisions)
  61. Kim2011‏‎ (3 revisions)
  62. Gatk‏‎ (3 revisions)
  63. SYKmaf‏‎ (3 revisions)
  64. ThetaStat‏‎ (3 revisions)
  65. ErrorSykMethod‏‎ (2 revisions)
  66. Supersim‏‎ (2 revisions)
  67. Orlando2013‏‎ (2 revisions)
  68. Direct Ancestry‏‎ (2 revisions)
  69. Glf files‏‎ (2 revisions)
  70. Error estimation method‏‎ (2 revisions)
  71. Li2011‏‎ (2 revisions)
  72. LD‏‎ (2 revisions)
  73. Skotte‏‎ (2 revisions)
  74. Pbs‏‎ (2 revisions)
  75. Example of a covariance file‏‎ (1 revision)
  76. NgsRelate‏‎ (1 revision)
  77. Li2010‏‎ (1 revision)
  78. DistAngsd‏‎ (1 revision)
  79. SoapSNP‏‎ (1 revision)
  80. Test‏‎ (1 revision)
  81. ErrorPerfect‏‎ (1 revision)
  82. Covariance matrix for PCA‏‎ (1 revision)
  83. Example of cases control phenotype file‏‎ (1 revision)
  84. Example of a covariate file‏‎ (1 revision)
  85. Example of a quantitative phenotype file‏‎ (1 revision)
  86. PostFreq‏‎ (1 revision)
  87. Fst correctness‏‎ (1 revision)
  88. Memory Usage‏‎ (1 revision)
  89. Temp‏‎ (1 revision)
  90. Inbreed‏‎ (1 revision)
  91. Rasmussen2011‏‎ (1 revision)
  92. Majorminor‏‎ (1 revision)
  93. MajorMinor Method‏‎ (1 revision)

View (previous 100 | next 100) (20 | 50 | 100 | 250 | 500)