ANGSD: Analysis of next generation Sequencing Data

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  1. (hist) ‎Association ‎[22,922 bytes]
  2. (hist) ‎Input ‎[18,349 bytes]
  3. (hist) ‎Thetas,Tajima,Neutrality tests ‎[15,776 bytes]
  4. (hist) ‎SFS Estimation ‎[12,639 bytes]
  5. (hist) ‎Change log ‎[12,405 bytes]
  6. (hist) ‎Genotype Distribution ‎[12,401 bytes]
  7. (hist) ‎Abbababa2 ‎[11,774 bytes]
  8. (hist) ‎PCA MDS ‎[11,666 bytes]
  9. (hist) ‎Genotype Likelihoods ‎[10,127 bytes]
  10. (hist) ‎Safv3 ‎[9,903 bytes]
  11. (hist) ‎Error estimation ‎[9,758 bytes]
  12. (hist) ‎Vcf ‎[8,362 bytes]
  13. (hist) ‎Quick Start ‎[8,179 bytes]
  14. (hist) ‎Abbababa ‎[7,210 bytes]
  15. (hist) ‎Allele Counts ‎[7,191 bytes]
  16. (hist) ‎Fst correctness ‎[6,807 bytes]
  17. (hist) ‎Allele Frequencies ‎[6,229 bytes]
  18. (hist) ‎Fst ‎[6,145 bytes]
  19. (hist) ‎Contamination ‎[5,910 bytes]
  20. (hist) ‎Fasta ‎[5,743 bytes]
  21. (hist) ‎SnpFilters ‎[5,331 bytes]
  22. (hist) ‎RealSFS ‎[5,251 bytes]
  23. (hist) ‎Genotype likelihoods from alignments new ‎[5,114 bytes]
  24. (hist) ‎Filters ‎[5,114 bytes]
  25. (hist) ‎MsToGlf ‎[5,033 bytes]
  26. (hist) ‎Relatedness ‎[4,791 bytes]
  27. (hist) ‎Genotype calling ‎[4,543 bytes]
  28. (hist) ‎Sites ‎[3,890 bytes]
  29. (hist) ‎Inbreed ‎[3,624 bytes]
  30. (hist) ‎Plink ‎[3,600 bytes]
  31. (hist) ‎Glcomparison ‎[3,393 bytes]
  32. (hist) ‎HWE test ‎[3,350 bytes]
  33. (hist) ‎Depth ‎[2,903 bytes]
  34. (hist) ‎Major Minor ‎[2,637 bytes]
  35. (hist) ‎Beagle input ‎[2,524 bytes]
  36. (hist) ‎Haploid calling ‎[2,512 bytes]
  37. (hist) ‎SNP calling ‎[2,350 bytes]
  38. (hist) ‎Korneliussen2013 ‎[2,280 bytes]
  39. (hist) ‎ANGSD ‎[2,274 bytes]
  40. (hist) ‎ErrorPerfect ‎[2,063 bytes]
  41. (hist) ‎RealSFSmethod ‎[2,062 bytes]
  42. (hist) ‎Citing angsd ‎[1,940 bytes]
  43. (hist) ‎PCA ‎[1,876 bytes]
  44. (hist) ‎Heterozygosity ‎[1,845 bytes]
  45. (hist) ‎Angsd structure ‎[1,737 bytes]
  46. (hist) ‎2d SFS Estimation ‎[1,726 bytes]
  47. (hist) ‎Misc example ‎[1,599 bytes]
  48. (hist) ‎Installation ‎[1,532 bytes]
  49. (hist) ‎ThetaStat ‎[1,503 bytes]
  50. (hist) ‎Error estimation method ‎[1,469 bytes]
  51. (hist) ‎MajorMinor Method ‎[1,283 bytes]
  52. (hist) ‎Majorminor ‎[1,183 bytes]
  53. (hist) ‎Thorfinn ‎[1,101 bytes]
  54. (hist) ‎Mismatch ‎[1,096 bytes]
  55. (hist) ‎Orlando2013 ‎[1,021 bytes]
  56. (hist) ‎Rasmussen2011 ‎[1,005 bytes]
  57. (hist) ‎SYKmaf ‎[974 bytes]
  58. (hist) ‎ErrorSykMethod ‎[841 bytes]
  59. (hist) ‎Supersim ‎[837 bytes]
  60. (hist) ‎Gatk ‎[809 bytes]
  61. (hist) ‎Kim2011 ‎[799 bytes]
  62. (hist) ‎Base quality ‎[757 bytes]
  63. (hist) ‎Introduction ‎[743 bytes]
  64. (hist) ‎Authors ‎[701 bytes]
  65. (hist) ‎Fst PCA ‎[685 bytes]
  66. (hist) ‎SNP Calling ‎[658 bytes]
  67. (hist) ‎Regionfile ‎[647 bytes]
  68. (hist) ‎Nielsen2012 ‎[611 bytes]
  69. (hist) ‎NGSadmix ‎[610 bytes]
  70. (hist) ‎Li2011 ‎[593 bytes]
  71. (hist) ‎Temp ‎[587 bytes]
  72. (hist) ‎Skotte2012 ‎[551 bytes]
  73. (hist) ‎HWE and Inbreeding estimates ‎[528 bytes]
  74. (hist) ‎Changes ‎[517 bytes]
  75. (hist) ‎Memory Usage ‎[445 bytes]
  76. (hist) ‎PostFreq ‎[395 bytes]
  77. (hist) ‎Example of a quantitative phenotype file ‎[364 bytes]
  78. (hist) ‎Glf files ‎[328 bytes]
  79. (hist) ‎Direct Ancestry ‎[317 bytes]
  80. (hist) ‎Example of a covariate file ‎[271 bytes]
  81. (hist) ‎Example of a covariance file ‎[271 bytes]
  82. (hist) ‎Li2010 ‎[256 bytes]
  83. (hist) ‎DistAngsd ‎[201 bytes]
  84. (hist) ‎SoapSNP ‎[175 bytes]
  85. (hist) ‎Bugs ‎[168 bytes]
  86. (hist) ‎Pbs ‎[107 bytes]
  87. (hist) ‎LD ‎[105 bytes]
  88. (hist) ‎Example of cases control phenotype file ‎[98 bytes]
  89. (hist) ‎Tutorial ‎[88 bytes]
  90. (hist) ‎NgsRelate ‎[84 bytes]
  91. (hist) ‎Covariance matrix for PCA ‎[29 bytes]
  92. (hist) ‎Test ‎[23 bytes]
  93. (hist) ‎Skotte ‎[0 bytes]

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