ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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18 July 2017
- 15:1015:10, 18 July 2017 diff hist −1 HWE test →example
- 15:0815:08, 18 July 2017 diff hist +164 HWE test →example
- 14:5114:51, 18 July 2017 diff hist +2 HWE test →Use as a filter
- 14:5014:50, 18 July 2017 diff hist +13 HWE test No edit summary
- 14:5014:50, 18 July 2017 diff hist −181 HWE test No edit summary
3 March 2017
- 12:1612:16, 3 March 2017 diff hist +170 Filters →Number of non missing individuals
- 11:5811:58, 3 March 2017 diff hist −31 Filters →Extra
- 11:5611:56, 3 March 2017 diff hist +226 Filters →Extra
24 January 2017
- 14:3914:39, 24 January 2017 diff hist −1 Filters →Selected Sites
- 14:2614:26, 24 January 2017 diff hist +151 PCA MDS →Options
- 14:2414:24, 24 January 2017 diff hist +2 PCA MDS →single read sampling approach for PCA or MDS
- 14:2314:23, 24 January 2017 diff hist +263 PCA MDS No edit summary
- 14:1814:18, 24 January 2017 diff hist +1 PCA MDS No edit summary
- 14:1714:17, 24 January 2017 diff hist +26 PCA MDS No edit summary
16 November 2016
- 18:2018:20, 16 November 2016 diff hist +199 Fasta No edit summary
- 18:1918:19, 16 November 2016 diff hist +702 Fasta →Options
- 18:1318:13, 16 November 2016 diff hist +126 Fasta →Brief Overview
14 July 2016
- 16:4616:46, 14 July 2016 diff hist +3 Relatedness →IBS/genotype distribution
- 11:1611:16, 14 July 2016 diff hist +881 Genotype Distribution →Example current
- 11:0211:02, 14 July 2016 diff hist +6,368 Genotype Distribution No edit summary
- 10:4710:47, 14 July 2016 diff hist +94 Genotype Distribution No edit summary
- 10:4310:43, 14 July 2016 diff hist +946 Genotype Distribution No edit summary
- 10:3810:38, 14 July 2016 diff hist +4,100 Genotype Distribution No edit summary
12 July 2016
- 16:2816:28, 12 July 2016 diff hist 0 N File:RatioRel.png No edit summary current
- 16:2816:28, 12 July 2016 diff hist +41 Relatedness →IBS/genotype distribution
- 16:0216:02, 12 July 2016 diff hist +141 Relatedness →IBS/genotype distribution
- 15:5815:58, 12 July 2016 diff hist +302 Relatedness →How to get the IBS pattern
- 15:5515:55, 12 July 2016 diff hist +2 Relatedness No edit summary
- 15:5515:55, 12 July 2016 diff hist +12 N Genotype Distribution Created page with "comming soon"
- 15:5315:53, 12 July 2016 diff hist +299 Relatedness →IBS/genotype distribution
- 15:4715:47, 12 July 2016 diff hist +18 Relatedness No edit summary
- 15:4615:46, 12 July 2016 diff hist +60 Relatedness →IBS/genotype distribution
- 15:4315:43, 12 July 2016 diff hist +126 Relatedness →IBS/genotype distribution
- 15:3015:30, 12 July 2016 diff hist +243 Relatedness No edit summary
- 15:2215:22, 12 July 2016 diff hist +1,185 Relatedness No edit summary
- 15:0615:06, 12 July 2016 diff hist +2 Relatedness →IBS/genotype distribution
- 15:0515:05, 12 July 2016 diff hist +271 Relatedness →IBS/genotype distribution
- 15:0215:02, 12 July 2016 diff hist +87 Relatedness →NGSrelate - estimation of IBD probabilities
- 15:0115:01, 12 July 2016 diff hist −3 Relatedness →IBS/genotype distribution
- 14:5514:55, 12 July 2016 diff hist +444 Relatedness No edit summary
- 14:5314:53, 12 July 2016 diff hist +746 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +703 N Relatedness Created page with " * NGSrelate - estimation of kinship coefficients In order to estimate kinship coefficient then population allele frequencies are needed. These can be estimated from data if ..."
- 14:2014:20, 12 July 2016 diff hist +2 MediaWiki:Sidebar No edit summary
- 14:1914:19, 12 July 2016 diff hist +88 MediaWiki:Sidebar No edit summary
7 June 2016
- 17:3317:33, 7 June 2016 diff hist 0 PCA MDS →sampled bases *ibs.gz
31 May 2016
- 14:3114:31, 31 May 2016 diff hist +30 PCA MDS No edit summary
- 13:4713:47, 31 May 2016 diff hist 0 PCA MDS No edit summary
- 13:4613:46, 31 May 2016 diff hist +222 PCA MDS →MDS/PCA using R