ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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24 October 2023
- 11:0511:05, 24 October 2023 diff hist +23 N Test Created page with "# hello a sdf a fa sdfa" current
6 February 2023
- 18:4518:45, 6 February 2023 diff hist +1 Fasta →Ancestral fasta using multiple outgroup current
- 18:4518:45, 6 February 2023 diff hist +24 Fasta →Ancestral fasta
- 18:4418:44, 6 February 2023 diff hist +49 Fasta →Options
- 18:4318:43, 6 February 2023 diff hist +213 Fasta →Ancestral fasta
- 18:4118:41, 6 February 2023 diff hist +807 Fasta →Ancestral fasta
- 18:3218:32, 6 February 2023 diff hist +674 Fasta No edit summary
- 18:2218:22, 6 February 2023 diff hist +26 Allele Frequencies →Brief Overview
28 September 2021
- 11:0011:00, 28 September 2021 diff hist 0 Allele Frequencies No edit summary
- 10:5910:59, 28 September 2021 diff hist −4 SNP calling No edit summary current
- 10:5710:57, 28 September 2021 diff hist 0 Genotype likelihoods from alignments new No edit summary current
- 10:5710:57, 28 September 2021 diff hist 0 Input No edit summary current
- 10:5610:56, 28 September 2021 diff hist 0 Genotype Likelihoods No edit summary current
20 April 2020
- 17:2617:26, 20 April 2020 diff hist +62 PCA MDS →Options current
29 August 2019
- 09:2109:21, 29 August 2019 diff hist +113 Relatedness No edit summary current
17 July 2019
- 10:5710:57, 17 July 2019 diff hist −1 LD No edit summary current
- 10:5710:57, 17 July 2019 diff hist +106 N LD Created page with " For estimation of LD based on genotype likelihoods you can use [(https://github.com/fgvieira/ngsLD ngsLD]"
- 10:5410:54, 17 July 2019 diff hist +35 MediaWiki:Sidebar No edit summary current
4 October 2018
- 09:3709:37, 4 October 2018 diff hist +2 PCA MDS Undo revision 3053 by Albrecht (talk)
- 09:3609:36, 4 October 2018 diff hist −2 PCA MDS →Model
- 09:3509:35, 4 October 2018 diff hist +1 PCA MDS →sampled bases *ibs.gz
- 09:3109:31, 4 October 2018 diff hist +4 PCA MDS →sampled bases *ibs.gz
18 May 2018
- 14:1414:14, 18 May 2018 diff hist +69 Genotype Likelihoods →SYK (Kim et al.)
30 April 2018
- 13:3713:37, 30 April 2018 diff hist +27 N Dodepth Redirected page to Allele Counts current
- 13:3613:36, 30 April 2018 diff hist +27 N Docounts Redirected page to Allele Counts current
2 April 2018
- 12:0212:02, 2 April 2018 diff hist +28 N Docount Redirected page to Allele Counts current
- 12:0112:01, 2 April 2018 diff hist +30 N Dogeno Redirected page to Genotype calling current
- 12:0012:00, 2 April 2018 diff hist +25 N Domajorminor Redirected page to Major Minor current
- 11:5911:59, 2 April 2018 diff hist +32 N Rmtriallelic Redirected page to Allele Frequencies current
- 11:5811:58, 2 April 2018 diff hist +32 N Snp pval Redirected page to Allele Frequencies current
- 11:5711:57, 2 April 2018 diff hist +32 N Dopost Redirected page to Allele Frequencies current
- 11:5611:56, 2 April 2018 diff hist +32 N Domaf Redirected page to Allele Frequencies current
- 11:5311:53, 2 April 2018 diff hist +71 Allele Frequencies No edit summary
- 11:5211:52, 2 April 2018 diff hist −3 MediaWiki:Common.css No edit summary current
- 11:5011:50, 2 April 2018 diff hist +3 MediaWiki:Common.css No edit summary
- 11:4911:49, 2 April 2018 diff hist +54 Allele Frequencies No edit summary
- 11:4811:48, 2 April 2018 diff hist +82 N MediaWiki:Common.css Created page with "→CSS placed here will be applied to all skins: .keywords { display: none; }"
12 March 2018
- 17:3917:39, 12 March 2018 diff hist +471 PCA MDS No edit summary
7 February 2018
- 16:5916:59, 7 February 2018 diff hist −1 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test) current
- 16:5816:58, 7 February 2018 diff hist −24 MediaWiki:Sidebar No edit summary
- 16:5616:56, 7 February 2018 diff hist +65 PCA →single read sampling current
- 16:5516:55, 7 February 2018 diff hist +20 PCA →NGS tools
- 16:5416:54, 7 February 2018 diff hist +729 PCA No edit summary
- 16:5416:54, 7 February 2018 diff hist 0 N File:Pcangsd pca.png No edit summary current
- 16:4416:44, 7 February 2018 diff hist +303 NGSadmix No edit summary current
- 16:1516:15, 7 February 2018 diff hist +112 NGSadmix No edit summary
- 16:1516:15, 7 February 2018 diff hist 0 N File:AdmixtureNGS.png No edit summary current
19 January 2018
- 14:5914:59, 19 January 2018 diff hist +1 Genotype calling →Options
- 14:5814:58, 19 January 2018 diff hist +95 Genotype calling →Options
10 August 2017
- 10:3210:32, 10 August 2017 diff hist +18 Association →Output
- 10:3110:31, 10 August 2017 diff hist +95 Association →problems with inflation of p-values
- 10:2710:27, 10 August 2017 diff hist +20 Association →problems with inflation of p-values
- 10:2610:26, 10 August 2017 diff hist +341 Association →problems with inflation of p-values
- 10:2310:23, 10 August 2017 diff hist +1,293 Association No edit summary
- 10:1310:13, 10 August 2017 diff hist +11 Association No edit summary
- 10:1210:12, 10 August 2017 diff hist +142 Association →Dependency Chain
18 July 2017
- 15:3815:38, 18 July 2017 diff hist −1 HWE test →options
- 15:3815:38, 18 July 2017 diff hist +305 HWE test No edit summary
- 15:1015:10, 18 July 2017 diff hist −1 HWE test →example
- 15:0815:08, 18 July 2017 diff hist +164 HWE test →example
- 14:5114:51, 18 July 2017 diff hist +2 HWE test →Use as a filter
- 14:5014:50, 18 July 2017 diff hist +13 HWE test No edit summary
- 14:5014:50, 18 July 2017 diff hist −181 HWE test No edit summary
3 March 2017
- 12:1612:16, 3 March 2017 diff hist +170 Filters →Number of non missing individuals
- 11:5811:58, 3 March 2017 diff hist −31 Filters →Extra
- 11:5611:56, 3 March 2017 diff hist +226 Filters →Extra
24 January 2017
- 14:3914:39, 24 January 2017 diff hist −1 Filters →Selected Sites
- 14:2614:26, 24 January 2017 diff hist +151 PCA MDS →Options
- 14:2414:24, 24 January 2017 diff hist +2 PCA MDS →single read sampling approach for PCA or MDS
- 14:2314:23, 24 January 2017 diff hist +263 PCA MDS No edit summary
- 14:1814:18, 24 January 2017 diff hist +1 PCA MDS No edit summary
- 14:1714:17, 24 January 2017 diff hist +26 PCA MDS No edit summary
16 November 2016
- 18:2018:20, 16 November 2016 diff hist +199 Fasta No edit summary
- 18:1918:19, 16 November 2016 diff hist +702 Fasta →Options
- 18:1318:13, 16 November 2016 diff hist +126 Fasta →Brief Overview
14 July 2016
- 16:4616:46, 14 July 2016 diff hist +3 Relatedness →IBS/genotype distribution
- 11:1611:16, 14 July 2016 diff hist +881 Genotype Distribution →Example current
- 11:0211:02, 14 July 2016 diff hist +6,368 Genotype Distribution No edit summary
- 10:4710:47, 14 July 2016 diff hist +94 Genotype Distribution No edit summary
- 10:4310:43, 14 July 2016 diff hist +946 Genotype Distribution No edit summary
- 10:3810:38, 14 July 2016 diff hist +4,100 Genotype Distribution No edit summary
12 July 2016
- 16:2816:28, 12 July 2016 diff hist 0 N File:RatioRel.png No edit summary current
- 16:2816:28, 12 July 2016 diff hist +41 Relatedness →IBS/genotype distribution
- 16:0216:02, 12 July 2016 diff hist +141 Relatedness →IBS/genotype distribution
- 15:5815:58, 12 July 2016 diff hist +302 Relatedness →How to get the IBS pattern
- 15:5515:55, 12 July 2016 diff hist +2 Relatedness No edit summary
- 15:5515:55, 12 July 2016 diff hist +12 N Genotype Distribution Created page with "comming soon"
- 15:5315:53, 12 July 2016 diff hist +299 Relatedness →IBS/genotype distribution
- 15:4715:47, 12 July 2016 diff hist +18 Relatedness No edit summary
- 15:4615:46, 12 July 2016 diff hist +60 Relatedness →IBS/genotype distribution
- 15:4315:43, 12 July 2016 diff hist +126 Relatedness →IBS/genotype distribution
- 15:3015:30, 12 July 2016 diff hist +243 Relatedness No edit summary
- 15:2215:22, 12 July 2016 diff hist +1,185 Relatedness No edit summary
- 15:0615:06, 12 July 2016 diff hist +2 Relatedness →IBS/genotype distribution
- 15:0515:05, 12 July 2016 diff hist +271 Relatedness →IBS/genotype distribution
- 15:0215:02, 12 July 2016 diff hist +87 Relatedness →NGSrelate - estimation of IBD probabilities
- 15:0115:01, 12 July 2016 diff hist −3 Relatedness →IBS/genotype distribution
- 14:5514:55, 12 July 2016 diff hist +444 Relatedness No edit summary
- 14:5314:53, 12 July 2016 diff hist +746 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +4 Relatedness No edit summary