ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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Showing below up to 93 results in range #1 to #93.
- Temp (21:47, 29 May 2012)
- Li2010 (21:40, 14 June 2012)
- Majorminor (21:41, 14 June 2012)
- Covariance matrix for PCA (16:19, 18 June 2012)
- Inbreed (16:27, 18 June 2012)
- SNP Calling (12:34, 19 June 2012)
- Example of cases control phenotype file (10:09, 21 June 2012)
- Example of a quantitative phenotype file (10:10, 21 June 2012)
- Example of a covariance file (10:10, 21 June 2012)
- Example of a covariate file (10:11, 21 June 2012)
- Regionfile (15:37, 29 June 2012)
- Skotte (13:28, 24 September 2012)
- SoapSNP (13:32, 24 September 2012)
- Introduction (19:13, 23 October 2012)
- Glf files (13:00, 24 October 2012)
- Memory Usage (03:32, 18 December 2012)
- Error estimation method (17:53, 12 February 2013)
- Authors (13:50, 28 June 2013)
- Kim2011 (14:54, 28 June 2013)
- Skotte2012 (11:27, 29 June 2013)
- Nielsen2012 (11:31, 29 June 2013)
- Li2011 (11:38, 29 June 2013)
- Gatk (11:43, 29 June 2013)
- Base quality (09:17, 30 September 2013)
- Korneliussen2013 (15:03, 3 October 2013)
- Angsd structure (20:03, 4 December 2013)
- Changes (19:02, 17 December 2013)
- Depth (13:16, 3 January 2014)
- Tutorial (01:31, 10 January 2014)
- MajorMinor Method (15:15, 26 February 2014)
- ErrorSykMethod (17:12, 26 February 2014)
- ErrorPerfect (17:15, 26 February 2014)
- PostFreq (17:44, 26 February 2014)
- Orlando2013 (14:32, 27 June 2014)
- Rasmussen2011 (14:35, 27 June 2014)
- RealSFSmethod (13:23, 30 June 2014)
- Misc example (11:55, 31 July 2014)
- SYKmaf (19:50, 15 December 2014)
- Bugs (17:05, 26 February 2015)
- NgsRelate (10:23, 20 June 2015)
- Contamination (15:51, 11 July 2015)
- Fst PCA (16:21, 30 July 2015)
- Fst correctness (16:27, 30 July 2015)
- Citing angsd (10:08, 31 August 2015)
- Pbs (18:38, 8 October 2015)
- Sites (16:00, 16 November 2015)
- Major Minor (14:56, 4 December 2015)
- Quick Start (14:58, 4 December 2015)
- ANGSD (15:07, 4 December 2015)
- Supersim (16:18, 4 December 2015)
- Glcomparison (17:44, 5 February 2016)
- Safv3 (17:47, 5 February 2016)
- Abbababa (11:46, 11 March 2016)
- Genotype Distribution (11:16, 14 July 2016)
- Direct Ancestry (22:33, 8 November 2016)
- Error estimation (13:57, 12 January 2017)
- Heterozygosity (13:51, 24 January 2017)
- SnpFilters (21:24, 27 June 2017)
- HWE test (15:32, 23 October 2017)
- Beagle input (18:53, 6 November 2017)
- NGSadmix (16:44, 7 February 2018)
- PCA (16:56, 7 February 2018)
- HWE and Inbreeding estimates (16:59, 7 February 2018)
- ThetaStat (11:10, 20 April 2018)
- Abbababa2 (11:34, 26 June 2018)
- Plink (17:26, 30 April 2019)
- LD (10:57, 17 July 2019)
- 2d SFS Estimation (03:26, 17 August 2019)
- Fst (03:38, 17 August 2019)
- Relatedness (09:21, 29 August 2019)
- Filters (08:49, 15 November 2019)
- PCA MDS (17:26, 20 April 2020)
- Allele Counts (06:34, 2 May 2020)
- Thetas,Tajima,Neutrality tests (14:40, 27 August 2020)
- Haploid calling (11:21, 27 October 2020)
- MsToGlf (16:01, 26 July 2021)
- Genotype Likelihoods (10:56, 28 September 2021)
- Input (10:57, 28 September 2021)
- Genotype likelihoods from alignments new (10:57, 28 September 2021)
- SNP calling (10:59, 28 September 2021)
- Genotype calling (23:14, 2 March 2022)
- Mismatch (23:28, 2 March 2022)
- DistAngsd (09:41, 23 March 2022)
- RealSFS (13:20, 26 June 2022)
- Change log (13:59, 16 July 2022)
- Thorfinn (14:04, 16 July 2022)
- Fasta (18:45, 6 February 2023)
- Association (15:32, 7 June 2023)
- Allele Frequencies (12:16, 8 June 2023)
- Vcf (23:53, 21 June 2023)
- Test (11:05, 24 October 2023)
- SFS Estimation (16:22, 8 December 2023)
- Installation (23:25, 8 December 2023)