ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Angsd structure
This page contains a short description of the overall structure of angsd.
It can be divided into:
- Filereading
- Analysis
We allow for many different input formats, many of these are deprecated and have little use, but we have decided to keep these.
History
Angsd started back in 2009 as a simple program for estimating allele frequency, based on this we incrementally added new functionality. A rough timeline can be found in the AUTHORS file in the program bundle