ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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2 December 2013
- 18:1318:13, 2 December 2013 diff hist +426 Abbababa No edit summary
- 16:1416:14, 2 December 2013 diff hist +47 Abbababa No edit summary
- 16:1216:12, 2 December 2013 diff hist +12 Abbababa No edit summary
- 16:1116:11, 2 December 2013 diff hist −944 Abbababa No edit summary
- 16:0616:06, 2 December 2013 diff hist +2,257 N Abbababa Created page with "Available from version 0.559+. performs the abbababa test also called the D-statistic. This tests for ancient admixture (or wrong tree topology) <classdiagram type="dir:LR">..."
27 November 2013
- 22:0622:06, 27 November 2013 diff hist −2 Fasta No edit summary
- 22:0522:05, 27 November 2013 diff hist −2 Fasta No edit summary
- 18:5018:50, 27 November 2013 diff hist +39 Fasta No edit summary
- 18:4818:48, 27 November 2013 diff hist +31 Fasta No edit summary
- 18:4718:47, 27 November 2013 diff hist +116 Fasta No edit summary
- 18:4418:44, 27 November 2013 diff hist 0 Fasta No edit summary
- 18:4418:44, 27 November 2013 diff hist +1 Fasta →Example
- 18:4318:43, 27 November 2013 diff hist −5,515 Fasta No edit summary
- 18:3418:34, 27 November 2013 diff hist +6,504 N Fasta Created page with "This option create a fasta file from a sequencing data file. <classdiagram type="dir:LR"> [One bam file{bg:orange}]->[sequencing data|random base (-doFasta 1);consensus base..."
- 18:2418:24, 27 November 2013 diff hist +29 MediaWiki:Sidebar No edit summary
28 June 2013
- 14:0014:00, 28 June 2013 diff hist +2 Association →Score statistic
- 13:5913:59, 28 June 2013 diff hist +104 Association →Score statistic
11 June 2013
- 12:3812:38, 11 June 2013 diff hist +66 Error estimation →Error estimation using an outgroup and an error free individual
22 March 2013
- 19:1219:12, 22 March 2013 diff hist +66 MediaWiki:Sidebar No edit summary
- 19:1019:10, 22 March 2013 diff hist +130 MediaWiki:Sidebar No edit summary
- 16:2716:27, 22 March 2013 diff hist −33 ANGSD No edit summary
27 February 2013
- 12:1112:11, 27 February 2013 diff hist −72 Base quality →options
- 12:1012:10, 27 February 2013 diff hist −67 Error estimation →additional options
- 12:1012:10, 27 February 2013 diff hist −72 Allele Counts →options
- 12:1012:10, 27 February 2013 diff hist −72 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −71 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −72 Genotype Likelihoods →options
13 February 2013
- 11:5011:50, 13 February 2013 diff hist +278 Error estimation →example
12 February 2013
- 18:1218:12, 12 February 2013 diff hist −17 Error estimation →Error estimation using an outgroup and an error free individual
- 18:1218:12, 12 February 2013 diff hist +116 Error estimation →Error estimation using an outgroup and an error free individual
- 18:0618:06, 12 February 2013 diff hist +719 Error estimation →Error estimation using an outgroup and an error free individual
- 17:5317:53, 12 February 2013 diff hist −14 Error estimation method No edit summary current
- 17:5217:52, 12 February 2013 diff hist +1,483 N Error estimation method Created page with " The estimated rates can roughly be intrepreted as relative error rates. That is excess of errors in your sample compare to the error in the perfect indviduals. The idea is th..."
29 January 2013
- 19:1719:17, 29 January 2013 diff hist +1 Depth →Output
17 January 2013
- 20:2320:23, 17 January 2013 diff hist +16 Input →arguments
14 January 2013
4 December 2012
- 19:1019:10, 4 December 2012 diff hist −1,035 Bugs No edit summary
- 18:5818:58, 4 December 2012 diff hist +17 Bugs No edit summary
23 October 2012
- 21:1721:17, 23 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 21:1021:10, 23 October 2012 diff hist −2 MediaWiki:Sidebar No edit summary
- 20:4420:44, 23 October 2012 diff hist −2,321 Change log →Version notes
- 20:3620:36, 23 October 2012 diff hist 0 Citing angsd →Maf estimation from counts of alleles
- 20:3620:36, 23 October 2012 diff hist +2 Citing angsd →Maf estimation from counts of alleles
- 19:0919:09, 23 October 2012 diff hist +29 MediaWiki:Sidebar No edit summary
- 19:0819:08, 23 October 2012 diff hist +33 MediaWiki:Sidebar No edit summary
16 October 2012
- 15:5515:55, 16 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:5015:50, 16 October 2012 diff hist +4 Citing angsd →Maf estimation from counts of alleles
- 15:5015:50, 16 October 2012 diff hist −2 Citing angsd →Maf estimation from counts of alleles
- 15:4815:48, 16 October 2012 diff hist +7 MediaWiki:Sidebar No edit summary
- 15:4415:44, 16 October 2012 diff hist −13 Error estimation →example