ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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14 June 2012
- 21:5921:59, 14 June 2012 diff hist −242 ANGSD →Allele Frequency estimation
- 21:5921:59, 14 June 2012 diff hist −460 ANGSD →Inferring Major and Minor alleles
- 21:4121:41, 14 June 2012 diff hist +1,183 N Majorminor Created page with "Assuming that the considered site is diallelic, we infer those two alleles using the genotype likelihoods. Let <math>\{M,m\}</math> denote the two possible alleles at the dial..." current
- 21:4121:41, 14 June 2012 diff hist +179 N Skotte Created page with "Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing for next-generation sequencing data using score statistics. Genet Epidemiol. 2012 Jul;36(5):43..."
- 21:4021:40, 14 June 2012 diff hist +256 N Li2010 Created page with "Li Y, Vinckenbosch N, Tian G, Huerta-Sanchez E, Jiang T, Jiang H, Albrechtsen A, Andersen G, Cao H, Korneliussen T, et al., 2010. Resequencing of 200 human exomes identifies a..." current
- 21:3921:39, 14 June 2012 diff hist +1,015 Major Minor No edit summary
- 20:2320:23, 14 June 2012 diff hist −3 Input →optional arguments
- 20:2320:23, 14 June 2012 diff hist +179 Input →optional arguments
- 20:2120:21, 14 June 2012 diff hist +181 Input →obtional arguments
- 19:4519:45, 14 June 2012 diff hist +569 Input →bam files
- 19:2119:21, 14 June 2012 diff hist −3 Input →options
- 19:2119:21, 14 June 2012 diff hist −6 Input →Mapped sequence file
- 19:2119:21, 14 June 2012 diff hist +830 Input No edit summary
- 19:1619:16, 14 June 2012 diff hist −17 Input →Mapped sequence file
- 19:0219:02, 14 June 2012 diff hist −4 Input →example
- 18:5718:57, 14 June 2012 diff hist +285 N Installation Created page with "=Download= The source code is avaible as a tarball and be download here [http://popgen.dk/software/download/angsd/angsd0.3.tar.gz] =Install= Unpack the tarball ===Unix=== Th..."
11 June 2012
- 17:0917:09, 11 June 2012 diff hist +1 Input →example
- 16:5216:52, 11 June 2012 diff hist +988 Input →beagle format
- 12:2912:29, 11 June 2012 diff hist +26 MediaWiki:Sidebar No edit summary
- 12:2812:28, 11 June 2012 diff hist −120 MediaWiki:Sidebar No edit summary
- 12:2312:23, 11 June 2012 diff hist −10 MediaWiki:Sidebar No edit summary
- 12:2312:23, 11 June 2012 diff hist +11 MediaWiki:Sidebar No edit summary
- 12:2312:23, 11 June 2012 diff hist −16 MediaWiki:Sidebar No edit summary
- 12:2212:22, 11 June 2012 diff hist +257 N Input Created page with "ANSGD currently supports various mapped data, genotype likelihood formats and imputed genotype probability files =Mapped sequence file= ==bam files== ==soap files== =geno..."
- 12:1912:19, 11 June 2012 diff hist −14 ANGSD →Input data
- 12:1612:16, 11 June 2012 diff hist −633 ANGSD No edit summary
- 12:1412:14, 11 June 2012 diff hist +16 ANGSD No edit summary
- 11:5911:59, 11 June 2012 diff hist +161 ANGSD →About
- 11:5511:55, 11 June 2012 diff hist +30 ANGSD →overview
- 11:5311:53, 11 June 2012 diff hist +246 ANGSD →About
- 11:5011:50, 11 June 2012 diff hist +17 ANGSD →About
- 11:4811:48, 11 June 2012 diff hist +28 ANGSD →About
- 11:4711:47, 11 June 2012 diff hist +30 MediaWiki:Sitenotice No edit summary
- 11:4511:45, 11 June 2012 diff hist 0 File:Banner.png Albrecht uploaded a new version of "File:Banner.png" current
- 11:4211:42, 11 June 2012 diff hist −29 MediaWiki:Sitenotice No edit summary
- 11:4111:41, 11 June 2012 diff hist +28 MediaWiki:Sitenotice No edit summary
- 11:4011:40, 11 June 2012 diff hist 0 File:Banner.png Albrecht uploaded a new version of "File:Banner.png"
- 11:3311:33, 11 June 2012 diff hist −27 ANGSD No edit summary
- 11:3311:33, 11 June 2012 diff hist 0 N File:Banner.png No edit summary
- 11:3211:32, 11 June 2012 diff hist 0 MediaWiki:Sitenotice No edit summary
- 11:3211:32, 11 June 2012 diff hist +21 N MediaWiki:Sitenotice Created page with " Image:banner.gif"
- 11:3111:31, 11 June 2012 diff hist +29 ANGSD No edit summary
29 May 2012
- 23:0323:03, 29 May 2012 diff hist −127 ANGSD →overview
- 23:0323:03, 29 May 2012 diff hist +6 ANGSD →About
- 23:0123:01, 29 May 2012 diff hist +330 ANGSD →overview
- 22:2422:24, 29 May 2012 diff hist −49 ANGSD →genotype probabilities
- 22:2422:24, 29 May 2012 diff hist −89 ANGSD →genotype likelihoods
- 22:2322:23, 29 May 2012 diff hist −52 ANGSD →sequencing data
- 21:4721:47, 29 May 2012 diff hist +587 N Temp Created page with "<classdiagram> [sequence data]->[genotype;likelihoods] [bam files{bg:orange}]->[sequence data] [SOAP files{bg:orange}]->[sequence data] [sequence data]->[phat estimates;er..." current
- 21:4121:41, 29 May 2012 diff hist +233 ANGSD →genotype probabilities